>CHR544 (CHR544Q) /CSM/CH/CHR5-B/CHR544Q.Seq.d/
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAT
TAAAAAAAANGGGXXXXXXXXXXCTTATCAAGATTTAAAAATGTTACTCATGATGCAATC
TATGATGCAATCTATAGTTTGGATGAGTCAATATTGGATCTTGAAACCATTAATCAATTC
ATAAAGTATATTCCATCAAAGGAAGAAATTGATTGTATCATTGCATTTAAACAACAACAA
GAACAACTACCAGAGGAAGAGAGAATGAAATTGGGTAAATCTGAAATTTTCATTGATAAA
ATCTCTACCATTCCAAGATTAGAACAAAGAATTCAAGCATTACATTTCAAATTGAATTTC
CCTGATAAATTATATCATGCAAAACCAGACATTAGAAAATTCAATGAGGCATTTGTTCAA
CTTCAAAATAATAATATATTTGCAATTATGAAGTTAATTCTTTCCATTGGTAATTTCATT
AATTTTGGTACAAATCGTGGTAATGCAAGTGGTTTCAAAATAGATTCAATCAATAAAATG
GCTGATACAAAATCAAATATTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTA
TTAGAAAGTACTCAACCAGAATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGAT
GCTGCTACTCTTTCATTTAATCAATCGTCTTCTGAAATTAAATTATTAAGAGCTGGTTTA
ATTAAATTAGAAAAAGAAATTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGAT
GATGAAACTATTAATAATAAGGGAAGANATATAAATA

iki*ffknwylyiki*iidfitnpffyyiffff*KXKKKLKKX---

---LSRFKNVTHDAIYDAIYSLDESILDLETINQFIKYIPSKEEIDCIIAFKQQQEQLPE
EERMKLGKSEIFIDKISTIPRLEQRIQALHFKLNFPDKLYHAKPDIRKFNEAFVQLQNNN
IFAIMKLILSIGNFINFGTNRGNASGFKIDSINKMADTKSNIREKYTLVHYLIELLESTQ
PELLKVFDEIPSVVDAATLSFNQSSSEIKLLRAGLIKLEKEIFVRQPKSVEPKPDDETIN
NKGRXIN

Frame A:
ilkysflrigiyilkyrl*il*qihffiisffffkkxkkn*kkx---

---liki*kcys*cnl*cnl*fg*vnigs*nh*sihkvysikgrn*lyhci*tttrtttr
greneig*i*nfh**nlyhskirtknssitfqiefp**iiscktrh*kiq*gicstsk**
yicnyevnsfhw*fh*fwyksw*ckwfqnrfnq*ng*ykikys*kvytsslsh*virkys
triiksfr*nsisc*ccysfi*sivf*n*iikswfn*irkrnfc*ttkis*tktr**ny*
**gkxyk

Frame B:
y*nivf*elvfiy*nidyrfynksifllylffflkx*kkikkxg---

---LSRFKNVTHDAIYDAIYSLDESILDLETINQFIKYIPSKEEIDCIIAFKQQQEQLPE
EERMKLGKSEIFIDKISTIPRLEQRIQALHFKLNFPDKLYHAKPDIRKFNEAFVQLQNNN
IFAIMKLILSIGNFINFGTNRGNASGFKIDSINKMADTKSNIREKYTLVHYLIELLESTQ
PELLKVFDEIPSVVDAATLSFNQSSSEIKLLRAGLIKLEKEIFVRQPKSVEPKPDDETIN
NKGRXIN

Frame C:
iki*ffknwylyiki*iidfitnpffyyiffff*KXKKKLKKX---

---yqdlkmllmmqsmmqsivwmsqywilkplins*sifhqrkklivslhlnnnknnyqr
kre*nwvnlkfslikslpfqd*nkefkhyisn*islinyimqnqtlensmrhlfnfkiii
ylql*s*ffplvislilvqivvmqvvsk*iqsikwliqnqifvksih*fiislsy*kvln
qny*kfsmkfhqllmlllfhlinrllklny*elv*ln*kkkflldnqnqlnqnqmmklli
irexi*i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR544 (CHR544Q) /CSM/CH/CHR5-B/CHR544Q.Seq.d/                       1449   0.0
SLE344 (SLE344Q) /CSM/SL/SLE3-B/SLE344Q.Seq.d/                       1405   0.0
CHM586 (CHM586Q) /CSM/CH/CHM5-D/CHM586Q.Seq.d/                       1402   0.0
CHF163 (CHF163Q) /CSM/CH/CHF1-C/CHF163Q.Seq.d/                       1398   0.0
CHR732 (CHR732Q) /CSM/CH/CHR7-B/CHR732Q.Seq.d/                       1370   0.0
AFM619 (AFM619Q) /CSM/AF/AFM6-A/AFM619Q.Seq.d/                       1041   0.0
AHG740 (AHG740Q) /CSM/AH/AHG7-B/AHG740Q.Seq.d/                       1027   0.0
CHM164 (CHM164Q) /CSM/CH/CHM1-C/CHM164Q.Seq.d/                        971   0.0
CHE747 (CHE747Q) /CSM/CH/CHE7-B/CHE747Q.Seq.d/                        837   0.0
CHO112 (CHO112Q) /CSM/CH/CHO1-A/CHO112Q.Seq.d/                        597   e-169

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ812734|AJ812734.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia4  (drf4 gene).  1405   0.0    1
CZ681626|CZ681626.1 OM__Ba0240J19.f OM__Ba Oryza minuta genomic clone OM__Ba0240J19 5', genomic survey sequence.    42   0.016  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   0.033  7
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    40   0.047  2
AL845420|AL845420.7 Zebrafish DNA sequence from clone CH211-203K16 in linkage group 20.    34   0.062  8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36   0.13   8
CR762427|CR762427.14 Zebrafish DNA sequence from clone DKEY-253I9 in linkage group 1.    38   0.21   5
AC012463|AC012463.4 Genomic sequence for Arabidopsis thaliana BAC T2E6 from chromosome I, complete sequence.    40   0.23   7
BH396416|BH396416.1 AG-ND-140O21.TF.1 ND-TAM Anopheles gambiae genomic clone AG-ND-140O21, DNA sequence.    48   0.31   1
BH371994|BH371994.1 AG-ND-140O21.TF ND-TAM Anopheles gambiae genomic clone AG-ND-140O21 , DNA sequence.    48   0.31   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate...   467   e-130
BC073482_1(BC073482|pid:none) Xenopus laevis hypothetical protei...   137   3e-31
BC076585_1(BC076585|pid:none) Mus musculus dishevelled associate...   135   1e-30
(Q8BPM0) RecName: Full=Disheveled-associated activator of morpho...   135   1e-30
(Q9Y4D1) RecName: Full=Disheveled-associated activator of morpho...   135   2e-30
BC133280_1(BC133280|pid:none) Bos taurus dishevelled associated ...   132   1e-29
BX324141_1(BX324141|pid:none) Zebrafish DNA sequence from clone ...   130   4e-29
BC163491_1(BC163491|pid:none) Danio rerio dishevelled associated...   130   4e-29
AB082543_1(AB082543|pid:none) Dictyostelium discoideum forB gene...   130   7e-29
(Q54SP2) RecName: Full=Formin-B;                                      130   7e-29

 psg: 0.59  gvh: 0.30  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHR544 is nuc

>CHR544F.Seq
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAT
TAAAAAAAANGGGNNNNNNNNNN

>CHR544Z.Seq
NNNNNNNNNNCTTATCAAGATTTAAAAATGTTACTCATGATGCAATCTATGATGCAATCT
ATAGTTTGGATGAGTCAATATTGGATCTTGAAACCATTAATCAATTCATAAAGTATATTC
CATCAAAGGAAGAAATTGATTGTATCATTGCATTTAAACAACAACAAGAACAACTACCAG
AGGAAGAGAGAATGAAATTGGGTAAATCTGAAATTTTCATTGATAAAATCTCTACCATTC
CAAGATTAGAACAAAGAATTCAAGCATTACATTTCAAATTGAATTTCCCTGATAAATTAT
ATCATGCAAAACCAGACATTAGAAAATTCAATGAGGCATTTGTTCAACTTCAAAATAATA
ATATATTTGCAATTATGAAGTTAATTCTTTCCATTGGTAATTTCATTAATTTTGGTACAA
ATCGTGGTAATGCAAGTGGTTTCAAAATAGATTCAATCAATAAAATGGCTGATACAAAAT
CAAATATTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTATTAGAAAGTACTC
AACCAGAATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGATGCTGCTACTCTTT
CATTTAATCAATCGTCTTCTGAAATTAAATTATTAAGAGCTGGTTTAATTAAATTAGAAA
AAGAAATTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGATGATGAAACTATTA
ATAATAAGGGAAGANATATAAATA

>CHR544P.Seq
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAT
TAAAAAAAANGGG----------CTTATCAAGATTTAAAAATGTTACTCATGATGCAATC
TATGATGCAATCTATAGTTTGGATGAGTCAATATTGGATCTTGAAACCATTAATCAATTC
ATAAAGTATATTCCATCAAAGGAAGAAATTGATTGTATCATTGCATTTAAACAACAACAA
GAACAACTACCAGAGGAAGAGAGAATGAAATTGGGTAAATCTGAAATTTTCATTGATAAA
ATCTCTACCATTCCAAGATTAGAACAAAGAATTCAAGCATTACATTTCAAATTGAATTTC
CCTGATAAATTATATCATGCAAAACCAGACATTAGAAAATTCAATGAGGCATTTGTTCAA
CTTCAAAATAATAATATATTTGCAATTATGAAGTTAATTCTTTCCATTGGTAATTTCATT
AATTTTGGTACAAATCGTGGTAATGCAAGTGGTTTCAAAATAGATTCAATCAATAAAATG
GCTGATACAAAATCAAATATTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTA
TTAGAAAGTACTCAACCAGAATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGAT
GCTGCTACTCTTTCATTTAATCAATCGTCTTCTGAAATTAAATTATTAAGAGCTGGTTTA
ATTAAATTAGAAAAAGAAATTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGAT
GATGAAACTATTAATAATAAGGGAAGANATATAAATA