CHR541 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR541
Library	CH (Link to library)
Clone ID	CHR541 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11174-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR5-B/CHR541Q.Seq.d/
Representative seq. ID	CHR541P (Link to Original site)
Representative DNA sequence	>CHR541 (CHR541Q) /CSM/CH/CHR5-B/CHR541Q.Seq.d/ ATTATCTTTTTCATTTATTTTCACAACACACCATGTCTCACTCTGCAAACTTTGTAAATG TACAATCTCCACCATCATATATTCAATTAGCACAACAACAACAACAGCAACAACAACAAC AACTACAACAACAACAACAAACACAAAACCCAACATCTCCAACATCTTTTTTAGCTCAGC AGCAATATAGTGGTAATATACCAACAACAGCATCAAATCAACAACCATACCAACATATTC CACAACCATACCAACCAAATATTTCATCAATATTACAACCACTCCCAATACGATACATAT ATGTTAATCAACTTCCATTAGCACAACAACAACAACAACTACAACAAAATCAACTACAAC AACAACCACCAAACGTAATATACCAGCAACAGCCACTTATAGTACAACAACAACAACCAA ATACAGTACAACAACAGCAACAACAACCACCACAAACTATACAGCAACAACCAAATATGG CACAACCACAACCACAACAAACTCAACAATTTACAATGGAACAAACTTTTCAAAATATTT TAAATAAAATTAAAGATAAATTTGATAAATTTACAACGAATCATGTTGGACAAGATAATA TTACATTTAATAATGCTCAATTACCAATAGCAAAAAGAATGTAATACAATTTXXXXXXXX XXTAACAGCTGCTGCAATGATTCAATTGGATGAAGATATTGCTCATTATCATTCAAAATC TTGGTATGTTGATATTATGAAATCAATTGAAGAAGAGAAAAAGAAAAGAATTGAAGAAGA TGATCGTTTAAATAAACAAAGAAAGCAACAACAACAGCAACAACAAAGTAATTCATCATC ACCACATATTGTTGGAGGACATGTTCAAGATCAGTATAGTGAAATTAAAACTAATTTATT ATTGGAGGGTTTAGTATTAAAGAATATGAATCATGATGCTTCATTGATTAGTTCAAATGT TTTATTGAATCTTCATCCATTACCACAATCAAAAGAGGTGCAAATCGCTCAACAACGTTT GAATGAACGTTTGGAACTTTATATGCTAAAGAATAGTAAAGAGATACCAGGTGATGGCAA TTGTCAAATGCATGCTTTATCCGATCAGTTGTATGGTGATTTATCTCATTCTCAAGAAGT TAGAAAAACAATTGTCGATTGGTTAAGAAAGAATAAAGATTTTCAACTTCCAAATGGTGC TACCATTTGTCAATTTGTAAATACTAATAATTGGGATGACTATTGTAACGATATGTCAAA GAATGGAAATTGGGGTGATCATTTAACTCTCTTGGCTGCTGCTGAACATTTTGGTTCAAA GATTTCAATCATCTCTTCTGTTGAAAGTCAAAGTAACTTTTTCATTGAAATCATTCCATC TAAAATTTTAAATGATAAAGTTTTATTATTATCTCATTATGCNAATTTCATTA
sequence update	2002.10.25
Translated Amino Acid sequence	lsfsfiftthhvslcklckctistiiysistttttattttttttttntkpnisniffssa aiwytnnsiksttiptysttiptkyfinitttpntihicstsisttttttttksttt tttkrnipatatystttttkystttatttttnytattkygttttttnstiyngtnfskyf knri*iynescwtryyi**CSITNSKKNVIQF--- ---TAAAMIQLDEDIAHYHSKSWYVDIMKSIEEEKKKRIEEDDRLNKQRKQQQQQQQSNS SSPHIVGGHVQDQYSEIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQ RLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPN GATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEII PSKILNDKVLLLSHYANFI
Translated Amino Acid sequence (All Frames)	Frame A: iiffiyfhntpcltlqtlmynlhhhifnhnnnnsnnnnnynnnnkhktqhlqhlfls snivviyqqqhqinnhtnifhnhtnqifhqyynhsqydtymlinfhhnnnnnynkinyn nnhqtytsnshlynnnnqiqynnsnnnhhklysnnqiwhnhnhnklnnlqwnklfkif iklkinlinlqrimldkiilhlimlnyqqkecnti--- ---qllqfnwmkilliiiqnlgmlilnqlkkrkrkelkkmivinkesnnnsnnkvi hhhhilledmfkisivklkliyywrvyriimmlhlvqmfyifihyhnqkrcksln nvmnvwnficrivkryqvmaivkcmlypiscmviylilkklekqlsigerikifnfq mvlpfvnliliigmtivticqrmeigviilswlllnilvqrfqsslllkvkvtfslks fhlkfmikfyyylimxisl Frame B: lsfsfiftthhvslcklckctistiiysistttttattttttttttntkpnisniffssa aiwytnnsiksttiptysttiptkyfinitttpntihicstsisttttttttksttt tttkrnipatatystttttkystttatttttnytattkygttttttnstiyngtnfskyf knriiynescwtryyi*CSITNSKKNVIQF--- ---nsccndsigrycslsfkilvcyyeinrrekeknrrsfktkkatttattkf iittycwrtcsrsv*nnfiiggfsikeyescfidfkcfiesssittikrganrst tfetfgtlyake*rdtrwqlsnacfirsvvwfisfsrsknncrlvkkerfstsk wcyhlsickylgllryvkewklgsfnslgcctfwfkdfnhlfcksklfhnh sinfksfiiislcxfh Frame C: ylfhlfsqhtmshsanfvnvqsppsyiqlaqqqqqqqqqqlqqqqqtqnptsptsflaqq qysgnipttasnqqpyqhipqpyqpnissilqplpiryiyvnqlplaqqqqqlqqnqlqq qppnviyqqqplivqqqqpntvqqqqqqppqtiqqqpnmaqpqpqqtqqftmeqtfqnil nkikdkfdkfttnhvgqdnitfnnaqlpiakrmyn--- ---TAAAMIQLDEDIAHYHSKSWYVDIMKSIEEEKKKRIEEDDRLNKQRKQQQQQQQSNS SSPHIVGGHVQDQYSEIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQ RLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPN GATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEII PSKILNDKVLLLSHYANFI
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHC338 (SHC338Q) /CSM/SH/SHC3-B/SHC338Q.Seq.d/ 1289 0.0 CHR541 (CHR541Q) /CSM/CH/CHR5-B/CHR541Q.Seq.d/ 1289 0.0 CHN422 (CHN422Q) /CSM/CH/CHN4-A/CHN422Q.Seq.d/ 1289 0.0 CHM376 (CHM376Q) /CSM/CH/CHM3-D/CHM376Q.Seq.d/ 1289 0.0 CHL216 (CHL216Q) /CSM/CH/CHL2-A/CHL216Q.Seq.d/ 1289 0.0 CHG569 (CHG569Q) /CSM/CH/CHG5-C/CHG569Q.Seq.d/ 1289 0.0 CHF693 (CHF693Q) /CSM/CH/CHF6-D/CHF693Q.Seq.d/ 1289 0.0 CHF317 (CHF317Q) /CSM/CH/CHF3-A/CHF317Q.Seq.d/ 1289 0.0 AHM719 (AHM719Q) /CSM/AH/AHM7-A/AHM719Q.Seq.d/ 1289 0.0 AHL139 (AHL139Q) /CSM/AH/AHL1-B/AHL139Q.Seq.d/ 1289 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116551\|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 46 2e-05 10 AC090280\|AC090280.2 Homo sapiens chromosome 8 clone RP4-611F18 map 8, WORKING DRAFT SEQUENCE, 8 unordered pieces. 48 9e-05 2 AC073207\|AC073207.2 Homo sapiens chromosome 3 clone RP11-382L10, WORKING DRAFT SEQUENCE, 16 unordered pieces. 60 1e-04 1 AC117426\|AC117426.3 Homo sapiens 3 BAC RP11-130C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 60 1e-04 1 AE014850\|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence. 34 4e-04 13 AC024708\|AC024708.3 Homo sapiens chromosome 12 clone RP11-135F9, WORKING DRAFT SEQUENCE, 13 unordered pieces. 58 5e-04 1 AC010703\|AC010703.10 Homo sapiens chromosome 12 clone RP11-12N8, WORKING DRAFT SEQUENCE, 1 unordered pieces. 58 5e-04 1 AC126474\|AC126474.6 Homo sapiens 12 BAC RP11-135F9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 58 5e-04 1 AC152039\|AC152039.2 Dasypus novemcinctus clone VMRC5-375E23, WORKING DRAFT SEQUENCE, 5 ordered pieces. 50 7e-04 5 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 46 0.002 11
dna update	2005.11.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EU962473_1(EU962473\|pid:none) Zea mays clone 242997 unknown mRNA. 103 1e-20 BT054787_1(BT054787\|pid:none) Zea mays full-length cDNA clone ZM... 103 1e-20 EU976609_1(EU976609\|pid:none) Zea mays clone 984875 cysteine-typ... 103 1e-20 AK069427_1(AK069427\|pid:none) Oryza sativa Japonica Group cDNA c... 101 7e-20 AK221616_1(AK221616\|pid:none) Arabidopsis thaliana mRNA for hypo... 92 6e-17 CP000583_456(CP000583\|pid:none) Ostreococcus lucimarinus CCE9901... 92 6e-17 AK071971_1(AK071971\|pid:none) Oryza sativa Japonica Group cDNA c... 91 1e-16 AC153725_16(AC153725\|pid:none) Medicago truncatula clone mth2-78... 89 3e-16 AL162751_6(AL162751\|pid:none) Arabidopsis thaliana DNA chromosom... 89 4e-16 EU960748_1(EU960748\|pid:none) Zea mays clone 228240 cysteine-typ... 86 4e-15
protein update	2009. 4.12
PSORT	psg: 0.88 gvh: 0.33 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 28.0 %: nuclear 12.0 %: mitochondrial 8.0 %: plasma membrane 4.0 %: cytoskeletal >> prediction for CHR541 is cyt
5' end seq. ID	CHR541F
5' end seq.	>CHR541F.Seq ATTATCTTTTTCATTTATTTTCACAACACACCATGTCTCACTCTGCAAACTTTGTAAATG TACAATCTCCACCATCATATATTCAATTAGCACAACAACAACAACAGCAACAACAACAAC AACTACAACAACAACAACAAACACAAAACCCAACATCTCCAACATCTTTTTTAGCTCAGC AGCAATATAGTGGTAATATACCAACAACAGCATCAAATCAACAACCATACCAACATATTC CACAACCATACCAACCAAATATTTCATCAATATTACAACCACTCCCAATACGATACATAT ATGTTAATCAACTTCCATTAGCACAACAACAACAACAACTACAACAAAATCAACTACAAC AACAACCACCAAACGTAATATACCAGCAACAGCCACTTATAGTACAACAACAACAACCAA ATACAGTACAACAACAGCAACAACAACCACCACAAACTATACAGCAACAACCAAATATGG CACAACCACAACCACAACAAACTCAACAATTTACAATGGAACAAACTTTTCAAAATATTT TAAATAAAATTAAAGATAAATTTGATAAATTTACAACGAATCATGTTGGACAAGATAATA TTACATTTAATAATGCTCAATTACCAATAGCAAAAAGAATGTAATACAATTTNNNNNNNN NN
Length of 5' end seq.	662
3' end seq. ID	CHR541Z
3' end seq.	>CHR541Z.Seq NNNNNNNNNNTAACAGCTGCTGCAATGATTCAATTGGATGAAGATATTGCTCATTATCAT TCAAAATCTTGGTATGTTGATATTATGAAATCAATTGAAGAAGAGAAAAAGAAAAGAATT GAAGAAGATGATCGTTTAAATAAACAAAGAAAGCAACAACAACAGCAACAACAAAGTAAT TCATCATCACCACATATTGTTGGAGGACATGTTCAAGATCAGTATAGTGAAATTAAAACT AATTTATTATTGGAGGGTTTAGTATTAAAGAATATGAATCATGATGCTTCATTGATTAGT TCAAATGTTTTATTGAATCTTCATCCATTACCACAATCAAAAGAGGTGCAAATCGCTCAA CAACGTTTGAATGAACGTTTGGAACTTTATATGCTAAAGAATAGTAAAGAGATACCAGGT GATGGCAATTGTCAAATGCATGCTTTATCCGATCAGTTGTATGGTGATTTATCTCATTCT CAAGAAGTTAGAAAAACAATTGTCGATTGGTTAAGAAAGAATAAAGATTTTCAACTTCCA AATGGTGCTACCATTTGTCAATTTGTAAATACTAATAATTGGGATGACTATTGTAACGAT ATGTCAAAGAATGGAAATTGGGGTGATCATTTAACTCTCTTGGCTGCTGCTGAACATTTT GGTTCAAAGATTTCAATCATCTCTTCTGTTGAAAGTCAAAGTAACTTTTTCATTGAAATC ATTCCATCTAAAATTTTAAATGATAAAGTTTTATTATTATCTCATTATGCNAATTTCATT A
Length of 3' end seq.	781
Connected seq. ID	CHR541P
Connected seq.	>CHR541P.Seq ATTATCTTTTTCATTTATTTTCACAACACACCATGTCTCACTCTGCAAACTTTGTAAATG TACAATCTCCACCATCATATATTCAATTAGCACAACAACAACAACAGCAACAACAACAAC AACTACAACAACAACAACAAACACAAAACCCAACATCTCCAACATCTTTTTTAGCTCAGC AGCAATATAGTGGTAATATACCAACAACAGCATCAAATCAACAACCATACCAACATATTC CACAACCATACCAACCAAATATTTCATCAATATTACAACCACTCCCAATACGATACATAT ATGTTAATCAACTTCCATTAGCACAACAACAACAACAACTACAACAAAATCAACTACAAC AACAACCACCAAACGTAATATACCAGCAACAGCCACTTATAGTACAACAACAACAACCAA ATACAGTACAACAACAGCAACAACAACCACCACAAACTATACAGCAACAACCAAATATGG CACAACCACAACCACAACAAACTCAACAATTTACAATGGAACAAACTTTTCAAAATATTT TAAATAAAATTAAAGATAAATTTGATAAATTTACAACGAATCATGTTGGACAAGATAATA TTACATTTAATAATGCTCAATTACCAATAGCAAAAAGAATGTAATACAATTT-------- --TAACAGCTGCTGCAATGATTCAATTGGATGAAGATATTGCTCATTATCATTCAAAATC TTGGTATGTTGATATTATGAAATCAATTGAAGAAGAGAAAAAGAAAAGAATTGAAGAAGA TGATCGTTTAAATAAACAAAGAAAGCAACAACAACAGCAACAACAAAGTAATTCATCATC ACCACATATTGTTGGAGGACATGTTCAAGATCAGTATAGTGAAATTAAAACTAATTTATT ATTGGAGGGTTTAGTATTAAAGAATATGAATCATGATGCTTCATTGATTAGTTCAAATGT TTTATTGAATCTTCATCCATTACCACAATCAAAAGAGGTGCAAATCGCTCAACAACGTTT GAATGAACGTTTGGAACTTTATATGCTAAAGAATAGTAAAGAGATACCAGGTGATGGCAA TTGTCAAATGCATGCTTTATCCGATCAGTTGTATGGTGATTTATCTCATTCTCAAGAAGT TAGAAAAACAATTGTCGATTGGTTAAGAAAGAATAAAGATTTTCAACTTCCAAATGGTGC TACCATTTGTCAATTTGTAAATACTAATAATTGGGATGACTATTGTAACGATATGTCAAA GAATGGAAATTGGGGTGATCATTTAACTCTCTTGGCTGCTGCTGAACATTTTGGTTCAAA GATTTCAATCATCTCTTCTGTTGAAAGTCAAAGTAACTTTTTCATTGAAATCATTCCATC TAAAATTTTAAATGATAAAGTTTTATTATTATCTCATTATGCNAATTTCATTA
Length of connected seq.	1423
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas