>CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/
AAAAAACATATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATT
TGTAATTTTATTTATTATATAATTTTTTTTTTTTTATAATAXXXXXXXXXXCCAACCATT
GCAACCGTTATCATTGCCATTTTGAATGATGGTACCATGTTAACAATCTCTAAAGATCGT
GTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACTT
TGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGATGGT
ACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCTC
ATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGGT
TTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAATT
GTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGAT
AATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGTT
TGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGTGTC
ACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTAAAATCTAT
GGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAGTTGCTGAA
CAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCATCATAAATCTGTTGTTACC
GATAATAAAGTTTAAAATAACAATAATATTTAAATAATGTATAATAATTAGTTTTAATNA
TTTTATGC

ktykiyen*tnilkffylnl*FYLLYNFFFFII---

---PTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFF
AIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFA
FVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMD
FIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQETH
HKSVVTDNKV*nnnni*imynn*f*xfy

Frame A:
kkhikfmkikltf*nffi*icnfiyyiifffl*---

---PTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFF
AIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFA
FVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMD
FIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQETH
HKSVVTDNKV*nnnni*imynn*f*xfy

Frame B:
kni*nl*kln*hskiflfkfvilfii*ffffyn---

---qplqplslpf*mmvpc*qslkiv*elemnqingifskyslwhfvmvsi**vqplysl
qsfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sll
slclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwi
sln*vspifsvvrlnqsikmhsvksmvglvkksqrkqlkslikllnnklkemlymhkkpi
inlllpiikfkitiifk*ciiisfnxfm

Frame C:
ktykiyen*tnilkffylnl*FYLLYNFFFFII---

---nhcnryhchfe*wyhvnnl*rscks*k*trsmesfrsihygtllwflfsrfnhcilc
nhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scnlcf
ryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcldlvfplvhsngf
h*irchlyspw*d*tnq*rctp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrnps
*iccyr**slk*q*ylnnv**lvlxilc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN107 (VFN107Q) /CSM/VF/VFN1-A/VFN107Q.Seq.d/                       1445   0.0
CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/                       1445   0.0
CHL228 (CHL228Q) /CSM/CH/CHL2-B/CHL228Q.Seq.d/                       1445   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1443   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                       1441   0.0
VHB591 (VHB591Q) /CSM/VH/VHB5-D/VHB591Q.Seq.d/                       1437   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1431   0.0
VHP623 (VHP623Q) /CSM/VH/VHP6-A/VHP623Q.Seq.d/                       1429   0.0
VHB556 (VHB556Q) /CSM/VH/VHB5-C/VHB556Q.Seq.d/                       1429   0.0
CHR710 (CHR710Q) /CSM/CH/CHR7-A/CHR710Q.Seq.d/                       1429   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1437   0.0    1
DN837903|DN837903.1 SmoC-1_01_O11_T7 Selaginella moellendorffii cDNA library SmoC-1 Selaginella moellendorffii cDNA 5, mRNA sequence.    62   2e-05  1
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   0.015  2
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   0.018  2
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   0.019  2
CV540351|CV540351.1 POD_031_B09 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence.    36   0.025  3
AL387523|AL387523.1 Medicago truncatula EST MtBC43B08F1 : T3 end of clone MtBC43B08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    46   0.043  2
AJ132892|AJ132892.1 Medicago truncatula mRNA for H+-ATPase.        46   0.26   2
CL553671|CL553671.2 OB__Ba0001O16.r OB__Ba Oryza brachyantha genomic clone OB__Ba0001O16 3', genomic survey sequence.    48   0.32   1
AP008209|AP008209.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3.    46   0.41   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   500   e-140
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   500   e-140
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   158   3e-37
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   152   2e-35
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   151   2e-35
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   151   3e-35
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   150   7e-35
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   149   2e-34
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   149   2e-34
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   148   2e-34

 psg: 0.98  gvh: 0.51  alm: 0.17  top: 0.60  tms: 0.33  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHR538 is end

>CHR538F.Seq
AAAAAACATATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATT
TGTAATTTTATTTATTATATAATTTTTTTTTTTTTATAATANNNNNNNNNN

>CHR538Z.Seq
NNNNNNNNNNCCAACCATTGCAACCGTTATCATTGCCATTTTGAATGATGGTACCATGTT
AACAATCTCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGA
AGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTT
TGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGA
TAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTT
CGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGC
TTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCC
ACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTG
TGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGA
TTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGA
TGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGT
CTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCA
TCATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTTAAATAATGTA
TAATAATTAGTTTTAATNATTTTATGC

>CHR538P.Seq
AAAAAACATATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATT
TGTAATTTTATTTATTATATAATTTTTTTTTTTTTATAATA----------CCAACCATT
GCAACCGTTATCATTGCCATTTTGAATGATGGTACCATGTTAACAATCTCTAAAGATCGT
GTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACTT
TGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGATGGT
ACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCTC
ATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGGT
TTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAATT
GTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGAT
AATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGTT
TGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGTGTC
ACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTAAAATCTAT
GGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAGTTGCTGAA
CAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCATCATAAATCTGTTGTTACC
GATAATAAAGTTTAAAATAACAATAATATTTAAATAATGTATAATAATTAGTTTTAATNA
TTTTATGC