>CHR537 (CHR537Q) /CSM/CH/CHR5-B/CHR537Q.Seq.d/
TATTGTTGTGGTAATTCACCAAGTGCAACAATTCATAACCAAACCACATTCCAATCATGG
TTTCACAATGTTCCAGGTGTGAATCTTCCAATTCAAAAAGATATCATTCTTACACAATCT
CTTTCAAATCCAAATATTTATTCCTACAGTAATGATTCTTATTTTGTAATTGATGGTCAA
GGTTTTGATGACAAATCAGTTTATCCAAATGAAAGAGTTTACCGTGACGCTTTTGGAAAT
CCACATAATTTCCACTTTTGTTTACAAGCTCATACCGAATTTCAATATAAAACTGGTGAT
GTTTTTAATTTTGCAGGTGATGATGATGTTTGGGTATTTATTAATAATATTTTGGTTGTG
GATTTGGGAGGTATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTA
ACACCTGGACAAAATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCT
CATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTC
TGTGAAGGTGATGGTACTTCTTGTTGTXXXXXXXXXXTGGTTTTAAATTGTGATGATAAT
AACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGAC
GGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGT
GTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGT
CATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGT
GCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCA
CATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTT
CCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGA
CAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGT
TGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTT
TAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAA
TTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAATATAAACATTAAGTTTATGT
AAAATTAAAATAAATAAA

YCCGNSPSATIHNQTTFQSWFHNVPGVNLPIQKDIILTQSLSNPNIYSYSNDSYFVIDGQ
GFDDKSVYPNERVYRDAFGNPHNFHFCLQAHTEFQYKTGDVFNFAGDDDVWVFINNILVV
DLGGIHTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGV
CEGDGTSCC---

---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlslckikink

Frame A:
YCCGNSPSATIHNQTTFQSWFHNVPGVNLPIQKDIILTQSLSNPNIYSYSNDSYFVIDGQ
GFDDKSVYPNERVYRDAFGNPHNFHFCLQAHTEFQYKTGDVFNFAGDDDVWVFINNILVV
DLGGIHTIASASVNLDLLGLTPGQNYPFDFFYCERHTVESHIRIETSLAFKCPRYDECGV
CEGDGTSCC---

---wf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivv
qlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivk
eewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvns
hqfanqkdthfkkn*n*yiisflfiiyfy*nfitkstnfnlilqykh*vyvklk*i

Frame B:
ivvvihqvqqfitkphsnhgftmfqv*ifqfkkisflhnlfqiqifiptvmilil*lmvk
vlmtnqfiqmkeftvtlleihiistfvyklipnfniklvmflilqvmmmfgylliifwlw
iwevfiqlqvqvltwiywv*hldkiihlisfivnvtl*nli*elkhlwhssvldmmnvvs
vkvmvllv---

---gfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*lls
nwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*k
rngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ih
tslqtkrtltlkktkinilflffllyifikil*psqlisi*yyninikfm*n*nk*

Frame C:
llw*ftkcnns*pnhipimvsqcsrcessnskryhsytisfkskylflq**flfcn*wsr
f**qislsk*kslp*rfwkst*fpllftssyrisi*nw*cf*fcr***clgiy**yfgcg
fgrysynckckc*lgfigfntwtklsi*flll*tshcrisykn*nifgiqvssi**mwcl
*r*wyfll---

---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlslckikink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR537 (CHR537Q) /CSM/CH/CHR5-B/CHR537Q.Seq.d/                       2202   0.0
SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                       1118   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                       1118   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1118   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                       1118   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                       1118   0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/                       1118   0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/                       1118   0.0
SHF473 (SHF473Q) /CSM/SH/SHF4-D/SHF473Q.Seq.d/                       1118   0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/                       1118   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    60   4e-13  4
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    66   2e-11  7
AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    56   1e-07  2
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule  DicA (dicA gene).    54   0.002  2
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling  molecule DicA, exons 1-2.    54   0.002  2
BX248506|BX248506.9 Zebrafish DNA sequence from clone DKEY-70K11 in linkage group 5.    38   0.018  6
AF362371|AF362371.1 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds.    42   0.24   2
DT289233|DT289233.1 JGI_CAAW2401.rev CAAW Pimephales promelas testis 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAW2401 3', mRNA sequence.    36   0.24   3
AX251444|AX251444.1 Sequence 412 from Patent WO0168912.            38   0.32   3
BD452965|BD452965.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes.    38   0.32   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                411   e-113
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                287   5e-76
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                231   5e-59
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                222   2e-56
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                210   9e-53
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                205   3e-51
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                185   2e-45
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   179   1e-43
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   179   2e-43
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                175   3e-42

 psg: 0.81  gvh: 0.40  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHR537 is cyt

>CHR537F.Seq
TATTGTTGTGGTAATTCACCAAGTGCAACAATTCATAACCAAACCACATTCCAATCATGG
TTTCACAATGTTCCAGGTGTGAATCTTCCAATTCAAAAAGATATCATTCTTACACAATCT
CTTTCAAATCCAAATATTTATTCCTACAGTAATGATTCTTATTTTGTAATTGATGGTCAA
GGTTTTGATGACAAATCAGTTTATCCAAATGAAAGAGTTTACCGTGACGCTTTTGGAAAT
CCACATAATTTCCACTTTTGTTTACAAGCTCATACCGAATTTCAATATAAAACTGGTGAT
GTTTTTAATTTTGCAGGTGATGATGATGTTTGGGTATTTATTAATAATATTTTGGTTGTG
GATTTGGGAGGTATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTA
ACACCTGGACAAAATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCT
CATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTC
TGTGAAGGTGATGGTACTTCTTGTTGTNNNNNNNNNN

>CHR537Z.Seq
NNNNNNNNNNTGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTA
AATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCA
ATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGT
CCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACC
ACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACA
GGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAA
AGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAA
TGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTT
AAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTC
ACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTAT
TTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAA
TTTAATATTACAATATAAACATTAAGTTTATGTAAAATTAAAATAAATAAA

>CHR537P.Seq
TATTGTTGTGGTAATTCACCAAGTGCAACAATTCATAACCAAACCACATTCCAATCATGG
TTTCACAATGTTCCAGGTGTGAATCTTCCAATTCAAAAAGATATCATTCTTACACAATCT
CTTTCAAATCCAAATATTTATTCCTACAGTAATGATTCTTATTTTGTAATTGATGGTCAA
GGTTTTGATGACAAATCAGTTTATCCAAATGAAAGAGTTTACCGTGACGCTTTTGGAAAT
CCACATAATTTCCACTTTTGTTTACAAGCTCATACCGAATTTCAATATAAAACTGGTGAT
GTTTTTAATTTTGCAGGTGATGATGATGTTTGGGTATTTATTAATAATATTTTGGTTGTG
GATTTGGGAGGTATTCATACAATTGCAAGTGCAAGTGTTAACTTGGATTTATTGGGTTTA
ACACCTGGACAAAATTATCCATTTGATTTCTTTTATTGTGAACGTCACACTGTAGAATCT
CATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAATGTGGTGTC
TGTGAAGGTGATGGTACTTCTTGTTGT----------TGGTTTTAAATTGTGATGATAAT
AACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGAC
GGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGT
GTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGT
CATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGT
GCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCA
CATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTT
CCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGA
CAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGT
TGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTT
TAAAAAAAACTAAAATTAATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAA
TTTTATAACCAAGTCAACTAATTTCAATTTAATATTACAATATAAACATTAAGTTTATGT
AAAATTAAAATAAATAAA