CHR533
Library CH
(Link to library)
Clone ID CHR533
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR533 (CHR533Q) /CSM/CH/CHR5-B/CHR533Q.Seq.d/
XXXXXXXXXXGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATG
TATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAA
CTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAG
AGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCAT
TCAATTCGATAGAAGATATGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAA
CAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACC
ATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGT
TGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---QCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRV
CSSDWYCIEAQCDAKYGCIQFDRRYAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPF
VCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKG


Translated Amino Acid sequence (All Frames)
Frame A:
---vnalklqllnviwvinvwftvvpwkvvvmqlnvfvqtlvlvklvivnlvsvvn*rie
fvlpigivlklnvmqnmvafnsiedmlliivnvkkvsv*tillsvkmmenvflkimiqnh
lfvkkll*fqllllqvll*lvllf*vllylrvrkv


Frame B:
---smhsnsnc*m*fg**myglqlylgrwl*cnstclsklwcl*nwll*twfrl*ikg*s
lffrlvly*ssm*ckiwlhsir*kics****msrrclckqycyr*k*wkmyf*rl*skti
clskscfsfnccyckcccswcccfrccyicg*erl


Frame C:
---QCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRV
CSSDWYCIEAQCDAKYGCIQFDRRYAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPF
VCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKG


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR533 (CHR533Q) /CSM/CH/CHR5-B/CHR533Q.Seq.d/ 908 0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/ 900 0.0
SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/ 900 0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/ 900 0.0
SHL480 (SHL480Q) /CSM/SH/SHL4-D/SHL480Q.Seq.d/ 900 0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/ 900 0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/ 900 0.0
SHK230 (SHK230Q) /CSM/SH/SHK2-B/SHK230Q.Seq.d/ 900 0.0
SHG518 (SHG518Q) /CSM/SH/SHG5-A/SHG518Q.Seq.d/ 900 0.0
SHG357 (SHG357Q) /CSM/SH/SHG3-C/SHG357Q.Seq.d/ 900 0.0

own update 2004. 5.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 66 7e-07 1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence. 50 0.041 1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence. 50 0.041 1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137. 46 0.12 2
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence. 48 0.16 1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 48 0.16 1
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis. 38 0.36 2
CX118034|CX118034.1 EI112L19 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI112L19 5', mRNA sequence. 46 0.64 1
CB652801|CB652801.1 OSJNEc03D04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc03D04 5', mRNA sequence. 46 0.64 1
CB648789|CB648789.1 ---. 46 0.64 1
dna update 2005.11.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 275 3e-73
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 132 3e-30
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 126 2e-28
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 115 6e-25
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 112 5e-24
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 93 3e-18
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 83 3e-15
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 55 7e-07
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 50 2e-05
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 50 3e-05
protein update 2009. 5.20
PSORT

psg: 0.68 gvh: 0.57 alm: 0.16 top: 0.73 tms: 0.07 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHR533 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR533Z
3' end seq.
>CHR533Z.Seq
NNNNNNNNNNGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATG
TATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAA
CTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAG
AGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCAT
TCAATTCGATAGAAGATATGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAA
CAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACC
ATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGT
TGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTA
Length of 3' end seq. 468
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -