CHR521
Library CH
(Link to library)
Clone ID CHR521
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11113-1
Original site URL
Representative seq. ID CHR521P
(Link to Original site)
Representative DNA sequence
>CHR521 (CHR521Q) /CSM/CH/CHR5-A/CHR521Q.Seq.d/
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAGCAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACTGTAACAXXXXXXXXXXATTGCCATTAAAAAGATTGCACA
TGTATCAGCAAAAGCACAAAGAACCAATCTCAATGAGATTGGATTTTTAAATTTCTGTAA
GCATCCAAACATTGTCAGTTACTTAAGAAGTCATTTGGTTGATGATACCATTTGGATCGC
TATGGAGTATATGCAAGGTGGCACTTTAACCGAAGCAAGTCAAGGCCACACTTTCAATGA
GTCGTGTATCGCTTACGTTGCAAAGGGTATGTTGGAAGGCTTAATGTATTTACATGCTCA
CAACATCGTTCATAGGGATATTAAATCGGGTAACATTATGATGACCATCGATGGTAAAAT
CAAGATTGTCGATTTCGGTCTTTGTGTCGACGCAAATGAAAGAAAATTAGTACATATGGC
AGGTTCCCCTTTTTGGATGTCTCCAGAGATGATTCGTGGTGAGTCCTATGGCTGTCCAAC
CGATATTTGGAGTTTTGCAATTTGTCTTTTGGAATTGGCAAATGGTGAACCACCCCACAG
AAAATCTTCCCTCACTGCTATGTTCACCACTGCAACTGAGGGTTGTGCAGGTTTGGACAA
ACCTGAAAGATGGACCGAACACTTTACTCATTTCTTAAATCTTTGTTTAGAAATGGATCC
TTCAAAGAGATCAACTGCCGAACAACTTTTAAAACATCCTTGGATTAATTTATCTGAAAA
TCCTGAAACTANAAAAAGATTTTAGCTCAAATTTTCATTGCGAATGTTAGAATCATTTAG
sequence update 2002.10.25
Translated Amino Acid sequence
IMDVEFTPSDTNKFEANITKQHQVIELNNQEEQQQPEQQEQPEQQEELKDNNEKIKTSED
STTTTTTAATITTTGENSISITVTEANNNTNQLNKSTSSSSSLNNNKNEDNKSVTASIAP
SSPVIESSAIESAIDSPYISSASVFSNATNNNNNTTTTNVVVPPPQLLESSTENITSAAE
ITPVTTTTTEETINIPKESIEVQKQLAETTTTAAITTTNSTQVTSTTVT---

---IAIKKIAHVSAKAQRTNLNEIGFLNFCKHPNIVSYLRSHLVDDTIWIAMEYMQGGTL
TEASQGHTFNESCIAYVAKGMLEGLMYLHAHNIVHRDIKSGNIMMTIDGKIKIVDFGLCV
DANERKLVHMAGSPFWMSPEMIRGESYGCPTDIWSFAICLLELANGEPPHRKSSLTAMFT
TATEGCAGLDKPERWTEHFTHFLNLCLEMDPSKRSTAEQLLKHPWINLSENPETXKRF*l
kfslrmlesf


Translated Amino Acid sequence (All Frames)
Frame A:
IMDVEFTPSDTNKFEANITKQHQVIELNNQEEQQQPEQQEQPEQQEELKDNNEKIKTSED
STTTTTTAATITTTGENSISITVTEANNNTNQLNKSTSSSSSLNNNKNEDNKSVTASIAP
SSPVIESSAIESAIDSPYISSASVFSNATNNNNNTTTTNVVVPPPQLLESSTENITSAAE
ITPVTTTTTEETINIPKESIEVQKQLAETTTTAAITTTNSTQVTSTTVT---

---IAIKKIAHVSAKAQRTNLNEIGFLNFCKHPNIVSYLRSHLVDDTIWIAMEYMQGGTL
TEASQGHTFNESCIAYVAKGMLEGLMYLHAHNIVHRDIKSGNIMMTIDGKIKIVDFGLCV
DANERKLVHMAGSPFWMSPEMIRGESYGCPTDIWSFAICLLELANGEPPHRKSSLTAMFT
TATEGCAGLDKPERWTEHFTHFLNLCLEMDPSKRSTAEQLLKHPWINLSENPETXKRF*l
kfslrmlesf

Frame B:
lwm*nshpvtqinlklilpnntk*ln*iikknnnnqnnknnqnnkkn*kiitkr*klvki
qqqpqqqqqqlqplvktqfqlqlqrqiitlin*ikalvaavv*iiiktktirvllhqlhh
hhqslnhlq*nqqlthhtfhllqyfqtppiitttppqqtl*yhhhnylslqlkilhlqlk
lhq*qqqqqkrqlifqknq*kyknn*qkqqqqqq*llpiqhk*hqql*---

---lplkrlhmyqqkhkepismrldf*isvsiqtlsvt*eviwlmipfgslwsickval*
pkqvkatlsmsrvsltlqrvcwka*ciymlttsfigilnrvtl**psmvksrlsisvfvs
tqmken*yiwqvplfgclqr*fvvspmavqpifgvlqfvfwnwqmvnhptenlpsllcsp
lqlrvvqvwtnlkdgpntllis*ifv*kwilqrdqlpnnf*nilgliylkilklxkdfss
nfhcec*nhl

Frame C:
ygcrihtq*hk*i*s*yyqttpsd*ie*srrttttrttrttrttrrtkr**rkdkn**rf
nnnhnnssnnynhw*klnfnysyrgk**h*sik*kh**qq*fk***krrq*ecycincti
itsh*iicnrisn*ltihficfsifkrhq**qqhhhnkrcsttttit*vfn*kyyics*n
ytsdnnnnrrdn*yskrinrstkttsrnnnnssnnyyqfntsninncn---

---ch*kdctciskstknqsq*dwifkfl*askhcqllkksfg**yhldrygvyarwhfn
rsksrphfq*vvyrlrckgyvgrlnvftcsqhrs*gy*ig*hyddhrw*nqdcrfrslcr
rk*kkistygrfpfldvsrddsw*vlwlsnrylefcnlsfgigkw*ttpqkifphcyvhh
cn*glcrfgqt*kmdrtlysflkslfrngsfkeincrttfktsld*fi*ks*nxkkilaq
ifianvrii*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR521 (CHR521Q) /CSM/CH/CHR5-A/CHR521Q.Seq.d/ 2357 0.0
SHC466 (SHC466Q) /CSM/SH/SHC4-C/SHC466Q.Seq.d/ 1467 0.0
AHF870 (AHF870Q) /CSM/AH/AHF8-C/AHF870Q.Seq.d/ 1467 0.0
SHK616 (SHK616Q) /CSM/SH/SHK6-A/SHK616Q.Seq.d/ 1461 0.0
CHL312 (CHL312Q) /CSM/CH/CHL3-A/CHL312Q.Seq.d/ 1461 0.0
AHO687 (AHO687Q) /CSM/AH/AHO6-D/AHO687Q.Seq.d/ 1461 0.0
AHM540 (AHM540Q) /CSM/AH/AHM5-B/AHM540Q.Seq.d/ 1461 0.0
AHH860 (AHH860Q) /CSM/AH/AHH8-C/AHH860Q.Seq.d/ 1461 0.0
AHH666 (AHH666Q) /CSM/AH/AHH6-C/AHH666Q.Seq.d/ 1461 0.0
CHL737 (CHL737Q) /CSM/CH/CHL7-B/CHL737Q.Seq.d/ 1459 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF238312|AF238312.1 Dictyostelium discoideum putative serine-threonine protein kinase MkcB (mkcB) gene, complete cds. 62 2e-28 11
DQ120982|DQ120982.1 Hucho taimen clone ZB-38 microsatellite sequence. 40 6e-05 4
U60169|U60169.1 Dictyostelium discoideum putative protein kinase MkcA (mkcA) gene, complete cds. 36 2e-04 5
DQ121070|DQ121070.1 Hucho taimen clone ZA-63 microsatellite sequence. 40 2e-04 3
BZ260408|BZ260408.1 CH230-335G9.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-335G9, DNA sequence. 40 8e-04 3
DQ121083|DQ121083.1 Hucho taimen clone ZA-78 microsatellite sequence. 44 0.001 3
AY051798|AY051798.1 Drosophila melanogaster LD31537 full length cDNA. 52 0.002 2
DU005017|DU005017.1 300586 Tomato MboI BAC Library Lycopersicon esculentum genomic clone SL_MboI0043H22 3, genomic survey sequence. 40 0.003 3
AY160100|AY160100.1 Dictyostelium discoideum nucleotide exchange factor RasGEF K (gefK) gene, complete cds. 34 0.004 6
DT732041|DT732041.1 EST1165891 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TB28, mRNA sequence. 36 0.004 3
dna update 2005.11.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF092132_1(AF092132|pid:none) Homo sapiens PAK2 mRNA, complete c... 195 3e-48
AF155651_1(AF155651|pid:none) Human P21 activated kinase-3 mRNA. 191 4e-47
AM943853_1(AM943853|pid:none) Mus musculus mRNA for PAK3c protei... 191 4e-47
AF082297_1(AF082297|pid:none) Mus musculus Cdc42/Rac effector ki... 191 4e-47
AM943852_1(AM943852|pid:none) Homo sapiens mRNA for PAK3cb prote... 191 4e-47
(Q7YQL3) RecName: Full=Serine/threonine-protein kinase PAK 3; ... 191 4e-47
(Q61036) RecName: Full=Serine/threonine-protein kinase PAK 3; ... 191 4e-47
AJ496262_1(AJ496262|pid:none) Mus musculus mRNA for p21-activate... 191 4e-47
AF485330_1(AF485330|pid:none) Xenopus laevis Pak3 serine/threoni... 191 7e-47
AM943855_1(AM943855|pid:none) Xenopus laevis mRNA for PAK3a prot... 191 7e-47
protein update 2009. 4.12
PSORT

psg: 0.75 gvh: 0.18 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHR521 is cyt

5' end seq. ID CHR521F
5' end seq.
>CHR521F.Seq
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAGCAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACTGTAACANNNNNNNNNN
Length of 5' end seq. 697
3' end seq. ID CHR521Z
3' end seq.
>CHR521Z.Seq
NNNNNNNNNNATTGCCATTAAAAAGATTGCACATGTATCAGCAAAAGCACAAAGAACCAA
TCTCAATGAGATTGGATTTTTAAATTTCTGTAAGCATCCAAACATTGTCAGTTACTTAAG
AAGTCATTTGGTTGATGATACCATTTGGATCGCTATGGAGTATATGCAAGGTGGCACTTT
AACCGAAGCAAGTCAAGGCCACACTTTCAATGAGTCGTGTATCGCTTACGTTGCAAAGGG
TATGTTGGAAGGCTTAATGTATTTACATGCTCACAACATCGTTCATAGGGATATTAAATC
GGGTAACATTATGATGACCATCGATGGTAAAATCAAGATTGTCGATTTCGGTCTTTGTGT
CGACGCAAATGAAAGAAAATTAGTACATATGGCAGGTTCCCCTTTTTGGATGTCTCCAGA
GATGATTCGTGGTGAGTCCTATGGCTGTCCAACCGATATTTGGAGTTTTGCAATTTGTCT
TTTGGAATTGGCAAATGGTGAACCACCCCACAGAAAATCTTCCCTCACTGCTATGTTCAC
CACTGCAACTGAGGGTTGTGCAGGTTTGGACAAACCTGAAAGATGGACCGAACACTTTAC
TCATTTCTTAAATCTTTGTTTAGAAATGGATCCTTCAAAGAGATCAACTGCCGAACAACT
TTTAAAACATCCTTGGATTAATTTATCTGAAAATCCTGAAACTANAAAAAGATTTTAGCT
CAAATTTTCATTGCGAATGTTAGAATCATTTAG
Length of 3' end seq. 753
Connected seq. ID CHR521P
Connected seq.
>CHR521P.Seq
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAGCAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACTGTAACA----------ATTGCCATTAAAAAGATTGCACA
TGTATCAGCAAAAGCACAAAGAACCAATCTCAATGAGATTGGATTTTTAAATTTCTGTAA
GCATCCAAACATTGTCAGTTACTTAAGAAGTCATTTGGTTGATGATACCATTTGGATCGC
TATGGAGTATATGCAAGGTGGCACTTTAACCGAAGCAAGTCAAGGCCACACTTTCAATGA
GTCGTGTATCGCTTACGTTGCAAAGGGTATGTTGGAAGGCTTAATGTATTTACATGCTCA
CAACATCGTTCATAGGGATATTAAATCGGGTAACATTATGATGACCATCGATGGTAAAAT
CAAGATTGTCGATTTCGGTCTTTGTGTCGACGCAAATGAAAGAAAATTAGTACATATGGC
AGGTTCCCCTTTTTGGATGTCTCCAGAGATGATTCGTGGTGAGTCCTATGGCTGTCCAAC
CGATATTTGGAGTTTTGCAATTTGTCTTTTGGAATTGGCAAATGGTGAACCACCCCACAG
AAAATCTTCCCTCACTGCTATGTTCACCACTGCAACTGAGGGTTGTGCAGGTTTGGACAA
ACCTGAAAGATGGACCGAACACTTTACTCATTTCTTAAATCTTTGTTTAGAAATGGATCC
TTCAAAGAGATCAACTGCCGAACAACTTTTAAAACATCCTTGGATTAATTTATCTGAAAA
TCCTGAAACTANAAAAAGATTTTAGCTCAAATTTTCATTGCGAATGTTAGAATCATTTAG
Length of connected seq. 1430
Full length Seq ID -
Full length Seq. -
Length of full length seq. -