>CHR511 (CHR511Q) /CSM/CH/CHR5-A/CHR511Q.Seq.d/
XXXXXXXXXXAAAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATG
GTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATG
AAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG
GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATG
AACAAGATGCTGCTAAATTACAAAATGAGATGGACCAATTAGAACTCTTACTTGAAGAGA
ATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAAC
AACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAAC
AACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAAC
AAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTG
AATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAAC
AATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAG
AACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATC
AAAAATAATTTAATCATTNCTTNCTTTTTAAAAAACT

---KQFKRAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENG
EDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQ
QQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQ
K*fnhxxlfkk

Frame A:
---KQFKRAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENG
EDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQ
QQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQ
K*fnhxxlfkk


Frame B:
---sssrglkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmv
kismsmklpnmklpf*mkmnkmllnykmrwtn*nsylkrmkknnfqikiynnlmrmkinn
nnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmln
wlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkik
nnliixxflkn


Frame C:
---avqeg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*
ryr*v*scpt*sclfr*k*trcc*itk*dgpirtlt*re*rrtifk*kfttt**e*kstt
ttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*i
g*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtksk
ii*sxlxf*kt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR511 (CHR511Q) /CSM/CH/CHR5-A/CHR511Q.Seq.d/                        684   0.0
SHE176 (SHE176Q) /CSM/SH/SHE1-D/SHE176Q.Seq.d/                        676   0.0
SHB806 (SHB806Q) /CSM/SH/SHB8-A/SHB806Q.Seq.d/                        676   0.0
SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/                        676   0.0
CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/                        676   0.0
CHR233 (CHR233Q) /CSM/CH/CHR2-B/CHR233Q.Seq.d/                        676   0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/                        676   0.0
AHK635 (AHK635Q) /CSM/AH/AHK6-B/AHK635Q.Seq.d/                        676   0.0
AHF785 (AHF785Q) /CSM/AH/AHF7-D/AHF785Q.Seq.d/                        676   0.0
AHE624 (AHE624Q) /CSM/AH/AHE6-A/AHE624Q.Seq.d/                        676   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   646   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   119   9e-23  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   5e-05  9
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.002  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.002  8
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.014  2
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.021  9
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.038  13
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    40   0.053  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.054  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   260   3e-68
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.9
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   1.9
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.9
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.2
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.2
CR380947_157(CR380947|pid:none) Candida glabrata strain CBS138 c...    34   5.5
BT057227_1(BT057227|pid:none) Salmo salar clone ssal-evf-542-023...    33   7.1
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   7.1
AL844508_319(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.3

 psg: 0.74  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHR511 is nuc

>CHR511Z.Seq
NNNNNNNNNNAAAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATG
GTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATG
AAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG
GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATG
AACAAGATGCTGCTAAATTACAAAATGAGATGGACCAATTAGAACTCTTACTTGAAGAGA
ATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAAC
AACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAAC
AACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAAC
AAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTG
AATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAAC
AATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAG
AACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATC
AAAAATAATTTAATCATTNCTTNCTTTTTAAAAAACT