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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR504
Library CH
(Link to library)
Clone ID CHR504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16458-1
Original site URL
Representative seq. ID CHR504P
(Link to Original site)
Representative DNA sequence 
>CHR504 (CHR504Q) /CSM/CH/CHR5-A/CHR504Q.Seq.d/
ATTTTCCTTCATATTATTAATTCTAATCAATAAAAAATGAATAAGAAATTAGAACAACTT
GAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCT
TTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGAT
TTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATTGTT
CATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTA
ACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAGTTTTCATTCGTATATCA
ACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTG
AAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTT
ATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAGAAT
GAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATTXXXXXXXXXXAATAGTA
TGTCTCAACATGAAAAGAATCACATCATCGCCGCATACACTTTTGAGATATCAAAATGTT
CAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGTAAACATTGATTCAGTAC
TCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAAACCAA
TCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATCTGGTG
ATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGACGTTA
TCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTCAACTT
TGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCATTGGTA
ACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCACTAAAA
TCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCTCAAAA
CCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCAAGATC
ATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTCTTTTATTCAC
sequence update 2002.10.25
Translated Amino Acid sequence 
iflhiinsnq*KMNKKLEQLEKFKTNDKNPVYSTTNTGVSLSDDANSLKAGPRGPTLLED
FVLREKITHFDHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKKTPVFIRIS
TVQGPRGSADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQN
EMPTGGSAHDTFYD---

---NSMSQHEKNHIIAAYTFEISKCSRPEVRTRYVNNILVNIDSVLAEKVAKNLGVKIEP
TSTKPIKKIMVKPSPALSQPNLLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVM
LVSSTLAQVECSGGEMLSPKGTIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEA
FKHLKTIAFGGSVSVIKELLRLPQDHGLLLGNGYKDITEQFFYS
Translated Amino Acid sequence (All Frames) 
Frame A:
iflhiinsnq*KMNKKLEQLEKFKTNDKNPVYSTTNTGVSLSDDANSLKAGPRGPTLLED
FVLREKITHFDHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKKTPVFIRIS
TVQGPRGSADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQN
EMPTGGSAHDTFYD---

---NSMSQHEKNHIIAAYTFEISKCSRPEVRTRYVNNILVNIDSVLAEKVAKNLGVKIEP
TSTKPIKKIMVKPSPALSQPNLLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVM
LVSSTLAQVECSGGEMLSPKGTIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEA
FKHLKTIAFGGSVSVIKELLRLPQDHGLLLGNGYKDITEQFFYS

Frame B:
fsfillilinkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*kqvqevqlfwki
lf*ekr*lilimkefqkelfmqeeqelmviffliriivn*qkqis*vnkirkhqfsfvyq
qfkdqedqliqfvtfmdll*nsiltkvimi*lviicqcflfkmqvhsqilymq*rwnhrm
kcqlgevlmilfmi---

---ivclnmkritssphtllryqnvqdqkfvhvmltisw*tliqyslkklprilv*rlnq
lqpnqsrrlw*nhhqlylnqiyylvislvvefqlslkkvltmmtlsiskmiwrkevqw*c
*slqlwhk*nvvvvkcylqkvqslvtlpfslmqsmfqnqqkkplksslmmvisfitflkp
lniskplhlvvlyr*lknyfvylkimvyylvmvikislnnsfih

Frame C:
fpsyy*f*sikne*eirtt*kiqnk**esslfnnkywcffir*ckfiksrskrsnsfgrf
cfkrkdnsf*s*knsrkncsckrnrsswlfsfl*gs**inksrfle*tr*entsfhsyin
ssrtkris*yss*rswicceily*rr*l*ssw**yasvfysrckfiprfctcskdgtte*
nanwgkcs*yfl*---

---*yvst*keshhrrihf*dikmfktrssytlc*qylgkh*fstr*kscqeswckd*tn
fnqtnqedygktitsfistkfiiw*yr*s*nfsyh*krc*l**ryqfqr*ygekrcngnv
slfnfgtsrm*ww*nviskrynhw*pfhfl*cslcskinrrsh*npl**w*fpslhs*sl
*tsqnhciwwfcigd*ritsftsrswfitw*wl*ryh*tillf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR504 (CHR504Q) /CSM/CH/CHR5-A/CHR504Q.Seq.d/                       2432   0.0
SHG560 (SHG560Q) /CSM/SH/SHG5-C/SHG560Q.Seq.d/                       1316   0.0
SFK745 (SFK745Q) /CSM/SF/SFK7-B/SFK745Q.Seq.d/                       1316   0.0
SFG171 (SFG171Q) /CSM/SF/SFG1-C/SFG171Q.Seq.d/                       1316   0.0
SFG141 (SFG141Q) /CSM/SF/SFG1-B/SFG141Q.Seq.d/                       1316   0.0
SFD467 (SFD467Q) /CSM/SF/SFD4-C/SFD467Q.Seq.d/                       1316   0.0
CHQ737 (CHQ737Q) /CSM/CH/CHQ7-B/CHQ737Q.Seq.d/                       1316   0.0
CHO459 (CHO459Q) /CSM/CH/CHO4-C/CHO459Q.Seq.d/                       1316   0.0
CHM475 (CHM475Q) /CSM/CH/CHM4-D/CHM475Q.Seq.d/                       1316   0.0
CHM230 (CHM230Q) /CSM/CH/CHM2-B/CHM230Q.Seq.d/                       1316   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY386221|AY386221.1 Dictyostelium discoideum catalase B gene, complete cds.  1316   0.0    1
AF183177|AF183177.1 Dictyostelium discoideum catalase B (catB) mRNA, partial cds.  1316   0.0    1
CZ543716|CZ543716.1 SRAA-aad51f01.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    88   5e-27  4
CP000001|CP000001.1 Bacillus cereus E33L, complete genome.         90   6e-16  2
AE017000|AE017000.1 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome.    60   3e-12  10
AE017026|AE017026.1 Bacillus anthracis str. Ames section 3 of 18 of the complete genome.    58   1e-10  7
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome.    60   1e-09  2
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome.    58   2e-08  2
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome.    58   2e-08  2
DV186206|DV186206.1 CT060_B08_CT060_3700_90.ab1 C. tentans tissue culture cDNA library Chironomus tentans cDNA, mRNA sequence.    52   2e-07  2
dna update 2005.11.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY386221_1(AY386221|pid:none) Dictyostelium discoideum catalase ...   435   e-120
(Q55DH8) RecName: Full=Catalase-B;          EC=1.11.1.6;              435   e-120
AF183177_1(AF183177|pid:none) Dictyostelium discoideum catalase ...   435   e-120
CP000949_5083(CP000949|pid:none) Pseudomonas putida W619, comple...   283   9e-75
CP000094_64(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, co...   281   4e-74
CP000076_74(CP000076|pid:none) Pseudomonas fluorescens Pf-5, com...   277   5e-73
CP000075_280(CP000075|pid:none) Pseudomonas syringae pv. syringa...   277   6e-73
(Q9I1W8) RecName: Full=Catalase HPII;          EC=1.11.1.6;  &AE...   276   1e-72
CP000438_2942(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA...   276   1e-72
CP000712_130(CP000712|pid:none) Pseudomonas putida F1, complete ...   274   5e-72
protein update 2009. 4.12
PSORT 

 psg: 0.43  gvh: 0.39  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHR504 is nuc
5' end seq. ID CHR504F
5' end seq. 
>CHR504F.Seq
ATTTTCCTTCATATTATTAATTCTAATCAATAAAAAATGAATAAGAAATTAGAACAACTT
GAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCT
TTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGAT
TTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATTGTT
CATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTA
ACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAGTTTTCATTCGTATATCA
ACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTG
AAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTT
ATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAGAAT
GAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATTNNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID CHR504Z
3' end seq. 
>CHR504Z.Seq
NNNNNNNNNNAATAGTATGTCTCAACATGAAAAGAATCACATCATCGCCGCATACACTTT
TGAGATATCAAAATGTTCAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGT
AAACATTGATTCAGTACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACC
AACTTCAACCAAACCAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACC
AAATTTATTATCTGGTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGT
TGACTATGATGACGTTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAAT
GTTAGTCTCTTCAACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAA
AGGTACAATCATTGGTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAAC
AGAAGAAGCCACTAAAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGC
CTTTAAACATCTCAAAACCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACT
TCGTTTACCTCAAGATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACA
ATTCTTTTATTCAC
Length of 3' end seq. 674
Connected seq. ID CHR504P
Connected seq. 
>CHR504P.Seq
ATTTTCCTTCATATTATTAATTCTAATCAATAAAAAATGAATAAGAAATTAGAACAACTT
GAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCT
TTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGAT
TTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATTGTT
CATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTA
ACAAAAGCAGATTTCTTGAGTAAACAAGATAAGAAAACACCAGTTTTCATTCGTATATCA
ACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTG
AAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTT
ATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAGAAT
GAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATT----------AATAGTA
TGTCTCAACATGAAAAGAATCACATCATCGCCGCATACACTTTTGAGATATCAAAATGTT
CAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGTAAACATTGATTCAGTAC
TCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAAACCAA
TCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATCTGGTG
ATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGACGTTA
TCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTCAACTT
TGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCATTGGTA
ACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCACTAAAA
TCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCTCAAAA
CCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCAAGATC
ATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTCTTTTATTCAC
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -