CHR502
Library CH
(Link to library)
Clone ID CHR502
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16403-1
Original site URL
Representative seq. ID CHR502P
(Link to Original site)
Representative DNA sequence
>CHR502 (CHR502Q) /CSM/CH/CHR5-A/CHR502Q.Seq.d/
AAAAAAAATAAAATAATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATT
CTCCTGGCTTTGATAAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTC
ACCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATG
AAGAATCAAAAAATAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAAC
AAAAACAAACATCAAATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTG
AAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAN
AGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAA
CCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTGTACCAGGGATA
GACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAATGTTAAACAAG
TAAACTATATGTCTTTGGAATTTTTATTGGGXXXXXXXXXXAAGTAATATGANAATTCAG
TATGAATGGTGGTCTNATCATTGGTACTTTGGATGGTGCAAACATTGAAATTCGTGATGC
CATTGGTCATGAAAATATGTACATCTGTGGTGCTCGTTCTGAAGAGGTCAACAAAGTAAA
GAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCTCGTGTTTTAACCGC
TATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCAAGATATTATCAACTCTGTTAG
TGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGTTCTTACTTGGATATTCAAAA
TTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTTC
AGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTTG
GGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTTC
TTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAAG
ATTATCACCTTTAACCTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTGG
TGGTGATAAAACCAACAACNCTTTAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
kk*nnktn*KKMEEKRSTNSPGFDKPKLNRSGSITSATSHPPRSNSNPKLVAKHQQQLYE
ESKNKRNQEQQNQQPQQQQQKQTSNQSEDPATQLSSLKFESDKEKEQALLWAFLASYLPX
DKGSLQKEFVKHVEYTLAQTKSECTDFSSFQALSYCTRDRLIERWKDTKLFFKQKNVKQV
NYMSLEFLL---

---SNMXIQYEWWSXHWYFGWCKH*ns*chws*kyvhlwcsf*rgqqskenys*wkihtr
h*mgscfnry*rryfwst*tipryyqlc*wwq*slhs*l*fwfllgyskfn*srfqr*s*
mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*rssffissttiwftk
*yqcyln*kiitfnlc*tnfcfsiicylww**nqqxfk


Translated Amino Acid sequence (All Frames)
Frame A:
kknkiikqikkkwkkkevpillalinqn*idqdqlhlqpvthqdqiptqswlqninsnfm
knqkikeiknnkinnlnnnnknkhqinqkilllnylh*nlkvikkknklyfglswqaifx
rirvhfkknllnmlnilwlkprvnvlisqvskhfhivpgidslrdgripnfslnkrmlnk
*ticlwnfyw---

---k*yxnsv*mvvxslvlwmvqtlkfvmplvmkictsvvlvlkrstk*rklfmmenshq
tldglvf*pllkkillvhmnnskilstllvvamiitflvmilvltwifkiqlikiskiel
nglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfqmkklvly*fhhhlvhq
mismlsqlkdyhl*pllnkllllhyllslvvikpttl*n

Frame B:
kkik**nklkkngrkkkyqfswl**tkik*irinyicnqsptkikfqpkvgcktstatl*
rikk*kksrttksttsttttktniksirrscysiifiei*k**rkrtsftlgflgklssx
g*gftskric*tc*iyfgsnqe*my*flkfpstfilyqg*th*emegyqtfl*tkec*ts
klyvfgifig---

---SNMXIQYEWWSXHWYFGWCKH*ns*chws*kyvhlwcsf*rgqqskenys*wkihtr
h*mgscfnry*rryfwst*tipryyqlc*wwq*slhs*l*fwfllgyskfn*srfqr*s*
mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*rssffissttiwftk
*yqcyln*kiitfnlc*tnfcfsiicylww**nqqxfk

Frame C:
kk*nnktn*KKMEEKRSTNSPGFDKPKLNRSGSITSATSHPPRSNSNPKLVAKHQQQLYE
ESKNKRNQEQQNQQPQQQQQKQTSNQSEDPATQLSSLKFESDKEKEQALLWAFLASYLPX
DKGSLQKEFVKHVEYTLAQTKSECTDFSSFQALSYCTRDRLIERWKDTKLFFKQKNVKQV
NYMSLEFLL---

---vi*xfsmnggliigtldganieirdaighenmyicgarseevnkvkkiihdgkftpd
trwarvltaikedtfgpheqfqdiinsvsggndhyilsydfgsyldiqnsidqdfkdrak
wakksimasvccgkfssdrtikeyaqqiwgieewkrpgpvpvsneearsllvpppsgspn
dinaisierlspltfvkqtsasplsvisggdktnnxlk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR502 (CHR502Q) /CSM/CH/CHR5-A/CHR502Q.Seq.d/ 1855 0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/ 1241 0.0
SHL445 (SHL445Q) /CSM/SH/SHL4-B/SHL445Q.Seq.d/ 1241 0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/ 1241 0.0
SHK334 (SHK334Q) /CSM/SH/SHK3-B/SHK334Q.Seq.d/ 1241 0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/ 1241 0.0
SHK175 (SHK175Q) /CSM/SH/SHK1-D/SHK175Q.Seq.d/ 1241 0.0
SHJ645 (SHJ645Q) /CSM/SH/SHJ6-B/SHJ645Q.Seq.d/ 1241 0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/ 1241 0.0
SHD760 (SHD760Q) /CSM/SH/SHD7-C/SHD760Q.Seq.d/ 1241 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 1233 0.0 1
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1. 70 2e-11 4
BI187719|BI187719.1 b2a02fs.r1 Fusarium sporotrichioides Tri 10 overexpressed cDNA library Fusarium sporotrichioides cDNA clone b2a02fs 5', mRNA sequence. 60 1e-04 1
AY635994|AY635994.1 Monacrosporium haptotylum glycogen phosphorylase-like protein (Gph1) mRNA, complete cds. 60 1e-04 1
CX648605|CX648605.1 COLD1_29_F01.g1_A029 Root cold Pinus taeda cDNA clone COLD1_29_F01_A029 5', mRNA sequence. 52 0.028 1
CX648527|CX648527.1 COLD1_29_F01.b1_A029 Root cold Pinus taeda cDNA clone COLD1_29_F01_A029 3', mRNA sequence. 52 0.028 1
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4. 50 0.11 1
AC127557|AC127557.5 Mus musculus BAC clone RP24-416I20 from chromosome 17, complete sequence. 48 0.44 1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 42 1.1 8
AC126247|AC126247.3 Mus musculus chromosome 13 clone RP24-370C15, complete sequence. 38 1.1 7
dna update 2005.11.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho... 145 4e-33
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos... 143 1e-32
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 138 3e-31
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c... 137 7e-31
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos... 137 7e-31
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou... 137 7e-31
(P32811) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 136 1e-30
EU857639_1(EU857639|pid:none) Zea mays starch phosphorylase 2 pr... 135 2e-30
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 135 3e-30
AB435244_1(AB435244|pid:none) Cucurbita maxima CmPhoH1 mRNA for ... 135 3e-30
protein update 2009. 4.12
PSORT

psg: 0.68 gvh: 0.48 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
12.0 %: mitochondrial

>> prediction for CHR502 is nuc

5' end seq. ID CHR502F
5' end seq.
>CHR502F.Seq
AAAAAAAATAAAATAATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATT
CTCCTGGCTTTGATAAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTC
ACCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATG
AAGAATCAAAAAATAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAAC
AAAAACAAACATCAAATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTG
AAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAN
AGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAA
CCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTGTACCAGGGATA
GACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAATGTTAAACAAG
TAAACTATATGTCTTTGGAATTTTTATTGGGNNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID CHR502Z
3' end seq.
>CHR502Z.Seq
NNNNNNNNNNAAGTAATATGANAATTCAGTATGAATGGTGGTCTNATCATTGGTACTTTG
GATGGTGCAAACATTGAAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTGTGGT
GCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCA
GACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAA
CAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTAT
GATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCT
AAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGA
ACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCA
GTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCA
AATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACCTTTGTTAAACAAACT
TCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACNCTTTAAAAC
Length of 3' end seq. 658
Connected seq. ID CHR502P
Connected seq.
>CHR502P.Seq
AAAAAAAATAAAATAATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATT
CTCCTGGCTTTGATAAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTC
ACCCACCAAGATCAAATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATG
AAGAATCAAAAAATAAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAAC
AAAAACAAACATCAAATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTG
AAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAN
AGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAA
CCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTGTACCAGGGATA
GACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAATGTTAAACAAG
TAAACTATATGTCTTTGGAATTTTTATTGGG----------AAGTAATATGANAATTCAG
TATGAATGGTGGTCTNATCATTGGTACTTTGGATGGTGCAAACATTGAAATTCGTGATGC
CATTGGTCATGAAAATATGTACATCTGTGGTGCTCGTTCTGAAGAGGTCAACAAAGTAAA
GAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCTCGTGTTTTAACCGC
TATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCAAGATATTATCAACTCTGTTAG
TGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGTTCTTACTTGGATATTCAAAA
TTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTATGGCTTC
AGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAACAAATTTG
GGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAGCTCGTTC
TTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAATTGAAAG
ATTATCACCTTTAACCTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCTCTGG
TGGTGATAAAACCAACAACNCTTTAAAAC
Length of connected seq. 1219
Full length Seq ID -
Full length Seq. -
Length of full length seq. -