>CHR484 (CHR484Q) /CSM/CH/CHR4-D/CHR484Q.Seq.d/
XXXXXXXXXXGGCTTCATTGGAAATTACCAATGAAGATTCAACCATTGTTGCAATGCCAA
AGGTTGGTGATATCGTTAAATTCAAATCTCAACATGACAAGAAATGGCATCGTTCAAAGA
TTACCTCTATCGCCGATGGTAAAATCAATGTTAATCTCATTGATTTGGGTGAAAGAGAAT
CTTTCCCACAATCTCAATCAAGTACTCTCATTAGAAATATCAATCATAAATTACAAAGCC
TTCCTTCATTGGTAACTTTGGTCAAATTAGCCTCTTGTAAGAATCCTTCCAATGATGATA
TCTACAATGATGCTATGGATTTCATGGAAAAAGAGTTTTTAGATCTCAAAGTTGGCGTTA
ATATCATACGTGATATCGATGGTACTCAACATGTTCTCCTCTCTGATAATGCTGGTATTA
TCAATGGTGAATTGGTTCGTAATGGTTTGGTTAGTGTCGATCGTTCGACTAAATTACCCT
CAATTCAACAACTTCAAGATGAAGAACAAAAAGCTAAATCAAAGAGATTAGGTGTTTGGA
GATTCGGTGATATCGATAGTGATGATGAAGATGATAAACCACGTTCAAATTTCAAAGGTA
AAGGTGGTAAACCAATTTCAAAAAAATAATTATAATAATTTATAAATTTTCTTTTTATTT
AAATAAATAAATAAATAAATAAAAAAGGATAAAAATAAAAATAAAAAGAAT

---ASLEITNEDSTIVAMPKVGDIVKFKSQHDKKWHRSKITSIADGKINVNLIDLGERES
FPQSQSSTLIRNINHKLQSLPSLVTLVKLASCKNPSNDDIYNDAMDFMEKEFLDLKVGVN
IIRDIDGTQHVLLSDNAGIINGELVRNGLVSVDRSTKLPSIQQLQDEEQKAKSKRLGVWR
FGDIDSDDEDDKPRSNFKGKGGKPISKK*l**finflfi*ink*inkkg*k*k*ke

Frame A:
---ASLEITNEDSTIVAMPKVGDIVKFKSQHDKKWHRSKITSIADGKINVNLIDLGERES
FPQSQSSTLIRNINHKLQSLPSLVTLVKLASCKNPSNDDIYNDAMDFMEKEFLDLKVGVN
IIRDIDGTQHVLLSDNAGIINGELVRNGLVSVDRSTKLPSIQQLQDEEQKAKSKRLGVWR
FGDIDSDDEDDKPRSNFKGKGGKPISKK*l**finflfi*ink*inkkg*k*k*ke


Frame B:
---lhwklpmkiqpllqcqrlvislnsnlnmtrngivqrlplspmvksmlisliwvkenl
shnlnqvlsleisiinykaflhw*lwsn*plvrilpmmistmmlwiswkksf*isklali
syvismvlnmfsslimlvlsmvnwfvmvwlvsivrlnypqfnnfkmknkklnqrd*vfgd
svisivmmkminhvqiskvkvvnqfqknnynnl*ifflfk*ink*ikkdknknkkn


Frame C:
---fignyq*rfnhccnakgw*yr*iqist*qemasfkdylyrrw*nqc*sh*fg*krif
ptisikysh*kyqs*itkpsfignfgqisll*esfq**ylq*cygfhgkrvfrsqswr*y
ht*yrwystcspl**cwyyqw*igs*wfg*crsfd*itlnsttsr*rtks*ikeirclei
r*yr****r**ttfkfqr*rw*tnfkkiiiiiykfsfylnk*ink*krikikikr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR484 (CHR484Q) /CSM/CH/CHR4-D/CHR484Q.Seq.d/                       1185   0.0
VHQ162 (VHQ162Q) /CSM/VH/VHQ1-C/VHQ162Q.Seq.d/                       1170   0.0
VHP896 (VHP896Q) /CSM/VH/VHP8-D/VHP896Q.Seq.d/                       1170   0.0
VHN113 (VHN113Q) /CSM/VH/VHN1-A/VHN113Q.Seq.d/                       1170   0.0
VHM256 (VHM256Q) /CSM/VH/VHM2-C/VHM256Q.Seq.d/                       1170   0.0
VHL165 (VHL165Q) /CSM/VH/VHL1-C/VHL165Q.Seq.d/                       1170   0.0
VHB524 (VHB524Q) /CSM/VH/VHB5-A/VHB524Q.Seq.d/                       1170   0.0
VFJ589 (VFJ589Q) /CSM/VF/VFJ5-D/VFJ589Q.Seq.d/                       1170   0.0
SHL548 (SHL548Q) /CSM/SH/SHL5-B/SHL548Q.Seq.d/                       1170   0.0
SHK270 (SHK270Q) /CSM/SH/SHK2-C/SHK270Q.Seq.d/                       1170   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z78198|Z78198.1 Caenorhabditis elegans Cosmid F55C5.               36   0.11   3
DT562240|DT562240.1 EST1072880 TMO Gossypium hirsutum cDNA, mRNA sequence.    48   0.25   1
AL161581|AL161581.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77.    48   0.25   1
AL022537|AL022537.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII  project).    48   0.25   1
AC002130|AC002130.2 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence.    48   0.25   1
CV548293|CV548293.1 3032OTEX51H6 BgORESTES infected NHM 3032 ovotestis Biomphalaria glabrata cDNA clone ZBA5794 similar to topoisomerase I beta, mRNA sequence.    46   0.99   1
CK990096|CK990096.1 BgHC-15.38 BgHC Biomphalaria glabrata cDNA 5', mRNA sequence.    46   0.99   1
AJ806357|AJ806357.1 Antirrhinum majus EST, clone 018_6_03_l01.     46   0.99   1
AJ804942|AJ804942.1 Antirrhinum majus EST, clone 018_5_11_g10.     46   0.99   1
AJ787064|AJ787064.1 Antirrhinum majus EST, clone 018_1_01_g09.     46   0.99   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7KZF4) RecName: Full=Staphylococcal nuclease domain-containing...    76   9e-13
AM270128_12(AM270128|pid:none) Aspergillus niger contig An07c010...    76   9e-13
I38968(I38968) 100 kDa coactivator - human  &U22055_1(U22055|pid...    76   9e-13
AB209510_1(AB209510|pid:none) Homo sapiens mRNA for EBNA-2 co-ac...    76   9e-13
(Q5REU4) RecName: Full=Staphylococcal nuclease domain-containing...    76   1e-12
CR859718_1(CR859718|pid:none) Pongo abelii mRNA; cDNA DKFZp469N2...    76   1e-12
(Q863B3) RecName: Full=Staphylococcal nuclease domain-containing...    74   4e-12
AL163912_6(AL163912|pid:none) Arabidopsis thaliana DNA chromosom...    73   9e-12
AK162432_1(AK162432|pid:none) Mus musculus 12 days embryo embryo...    72   2e-11
AK159837_1(AK159837|pid:none) Mus musculus osteoclast-like cell ...    72   2e-11

 psg: 0.75  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHR484 is cyt

>CHR484Z.Seq
NNNNNNNNNNGGCTTCATTGGAAATTACCAATGAAGATTCAACCATTGTTGCAATGCCAA
AGGTTGGTGATATCGTTAAATTCAAATCTCAACATGACAAGAAATGGCATCGTTCAAAGA
TTACCTCTATCGCCGATGGTAAAATCAATGTTAATCTCATTGATTTGGGTGAAAGAGAAT
CTTTCCCACAATCTCAATCAAGTACTCTCATTAGAAATATCAATCATAAATTACAAAGCC
TTCCTTCATTGGTAACTTTGGTCAAATTAGCCTCTTGTAAGAATCCTTCCAATGATGATA
TCTACAATGATGCTATGGATTTCATGGAAAAAGAGTTTTTAGATCTCAAAGTTGGCGTTA
ATATCATACGTGATATCGATGGTACTCAACATGTTCTCCTCTCTGATAATGCTGGTATTA
TCAATGGTGAATTGGTTCGTAATGGTTTGGTTAGTGTCGATCGTTCGACTAAATTACCCT
CAATTCAACAACTTCAAGATGAAGAACAAAAAGCTAAATCAAAGAGATTAGGTGTTTGGA
GATTCGGTGATATCGATAGTGATGATGAAGATGATAAACCACGTTCAAATTTCAAAGGTA
AAGGTGGTAAACCAATTTCAAAAAAATAATTATAATAATTTATAAATTTTCTTTTTATTT
AAATAAATAAATAAATAAATAAAAAAGGATAAAAATAAAAATAAAAAGAAT