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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR467
Library CH
(Link to library)
Clone ID CHR467
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR467P
(Link to Original site)
Representative DNA sequence 
>CHR467 (CHR467Q) /CSM/CH/CHR4-C/CHR467Q.Seq.d/
CAAATTATATAATTCACAAATAAATTTTATTTTTTTATTCAGATTATTTTTTTAAATTTT
AAATTTTTATTCATAAAAAATAAAAAAAAACAAACCATAAAAAAAAAAAAAAACCNTTNC
CCCCNTTTTTTTTTTNNAAATTCCCCTTTTNAAAAAAAAAXXXXXXXXXXTCNNNTATNT
CAATNGAGTTGTTGGATATCATCANNNACATGGATGAAATTGCAAGTACGCAAAGTTNTN
TTCAATTGGGGTTATGGACATNCCGTGNTAGANTATGGGCNTACCCAACCANCGATATCC
CAACCCTTCAAAATAGTAGTAACTCAAATNCCGCNCCATNNGAATNCAATGCTCGTAATG
TNTNAACNTTATGGGGTCCTTCAAATTCTGTACTCCATGATTACGCTTTCNAACTATGGA
GTGGTTTAGTAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
qii*FTNKFYFFIQIIFLNFKFLFIKNKKKQTIKKKKNXXPXFFFXNSPFXKK---

---SXXSXELLDIIXXMDEIASTQSXXQLGLWTXRXRXWAYPTXDIPTLQNSSNSNXAPX
EXNARNVXTLWGPSNSVLHDYAFXLWSGLV
Translated Amino Acid sequence (All Frames) 
Frame A:
qii*FTNKFYFFIQIIFLNFKFLFIKNKKKQTIKKKKNXXPXFFFXNSPFXKK---

---SXXSXELLDIIXXMDEIASTQSXXQLGLWTXRXRXWAYPTXDIPTLQNSSNSNXAPX
EXNARNVXTLWGPSNSVLHDYAFXLWSGLV

Frame B:
klynsqinfiflfrlff*ilnfys*kikknkp*kkkktxxpxffxxiplxkkk---

---xxxqxscwissxtwmklqvrkvxfnwgyghxvxxygxtqpxisqpfkivvtqxpxhx
nxmlvmxxxygvlqilysmitlsnygvv**

Frame C:
nyiihk*ilffysdyffkf*ifihkk*kktnhkkkkkpxppfffxkfpfxkk---

---xyxnxvvgyhxxhg*nckyakxxsigvmdxpx*xmgxpnxrypnpsk***lkxrxxx
xqcs*cxnxmgsfkfctp*lrfxtmewfsk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ882 (VHJ882Q) /CSM/VH/VHJ8-D/VHJ882Q.Seq.d/                        387   e-106
SSG770 (SSG770Q) /CSM/SS/SSG7-C/SSG770Q.Seq.d/                        387   e-106
SSG737 (SSG737Q) /CSM/SS/SSG7-B/SSG737Q.Seq.d/                        387   e-106
SLH504 (SLH504Q) /CSM/SL/SLH5-A/SLH504Q.Seq.d/                        387   e-106
SLA229 (SLA229Q) /CSM/SL/SLA2-B/SLA229Q.Seq.d/                        387   e-106
SHL843 (SHL843Q) /CSM/SH/SHL8-B/SHL843Q.Seq.d/                        387   e-106
SHL373 (SHL373Q) /CSM/SH/SHL3-D/SHL373Q.Seq.d/                        387   e-106
SHK415 (SHK415Q) /CSM/SH/SHK4-A/SHK415Q.Seq.d/                        387   e-106
SHK222 (SHK222Q) /CSM/SH/SHK2-A/SHK222Q.Seq.d/                        387   e-106
SHF439 (SHF439Q) /CSM/SH/SHF4-B/SHF439Q.Seq.d/                        387   e-106
own update 2003. 5.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

G65042|G65042.1 DH0622 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site.   174   1e-67  2
CJ769526|CJ769526.1 Ipomoea nil cDNA clone:jmsf9f07, 3' end.       42   9.3    1
CJ753155|CJ753155.1 Ipomoea nil cDNA clone:jmsf9f07, 5' end.       42   9.3    1
dna update 2005.11.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK220789_1(AK220789|pid:none) Arabidopsis thaliana mRNA for alph...    42   0.008
AF331669_1(AF331669|pid:none) Dromaius novaehollandiae lysosomal...    39   0.054
CP000246_834(CP000246|pid:none) Clostridium perfringens ATCC 131...    36   0.35
(P54802) RecName: Full=Alpha-N-acetylglucosaminidase;          E...    36   0.45
L78465_1(L78465|pid:none) Human alpha-N-acetylglucosaminidase (u...    36   0.45
AP006841_677(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...    35   0.59
CR626927_576(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ...    35   0.59
AM238663_572(AM238663|pid:none) Streptomyces ambofaciens ATCC 23...    35   0.59
BX255926_1(BX255926|pid:none) Mouse DNA sequence from clone RP23...    35   0.59
CP000312_824(CP000312|pid:none) Clostridium perfringens SM101, c...    35   0.77
protein update 2009. 4.12
PSORT 

 psg: 0.95  gvh: 0.36  alm: 0.30  top: 0.87  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR467 is nuc
5' end seq. ID CHR467F
5' end seq. 
>CHR467F.Seq
CAAATTATATAATTCACAAATAAATTTTATTTTTTTATTCAGATTATTTTTTTAAATTTT
AAATTTTTATTCATAAAAAATAAAAAAAAACAAACCATAAAAAAAAAAAAAAACCNTTNC
CCCCNTTTTTTTTTTNNAAATTCCCCTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 170
3' end seq. ID CHR467Z
3' end seq. 
>CHR467Z.Seq
NNNNNNNNNNTCNNNTATNTCAATNGAGTTGTTGGATATCATCANNNACATGGATGAAAT
TGCAAGTACGCAAAGTTNTNTTCAATTGGGGTTATGGACATNCCGTGNTAGANTATGGGC
NTACCCAACCANCGATATCCCAACCCTTCAAAATAGTAGTAACTCAAATNCCGCNCCATN
NGAATNCAATGCTCGTAATGTNTNAACNTTATGGGGTCCTTCAAATTCTGTACTCCATGA
TTACGCTTTCNAACTATGGAGTGGTTTAGTAAG
Length of 3' end seq. 273
Connected seq. ID CHR467P
Connected seq. 
>CHR467P.Seq
CAAATTATATAATTCACAAATAAATTTTATTTTTTTATTCAGATTATTTTTTTAAATTTT
AAATTTTTATTCATAAAAAATAAAAAAAAACAAACCATAAAAAAAAAAAAAAACCNTTNC
CCCCNTTTTTTTTTTNNAAATTCCCCTTTTNAAAAAAAAA----------TCNNNTATNT
CAATNGAGTTGTTGGATATCATCANNNACATGGATGAAATTGCAAGTACGCAAAGTTNTN
TTCAATTGGGGTTATGGACATNCCGTGNTAGANTATGGGCNTACCCAACCANCGATATCC
CAACCCTTCAAAATAGTAGTAACTCAAATNCCGCNCCATNNGAATNCAATGCTCGTAATG
TNTNAACNTTATGGGGTCCTTCAAATTCTGTACTCCATGATTACGCTTTCNAACTATGGA
GTGGTTTAGTAAG
Length of connected seq. 423
Full length Seq ID -
Full length Seq. -
Length of full length seq. -