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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR460
Library CH
(Link to library)
Clone ID CHR460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16708-1
Original site URL
Representative seq. ID CHR460P
(Link to Original site)
Representative DNA sequence 
>CHR460 (CHR460Q) /CSM/CH/CHR4-C/CHR460Q.Seq.d/
GTAATTTTTAGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAA
TACTAATATAATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAA
AAAAAAAANCCCCCCNANNNNNNNAXXXXXXXXXXCTATGGATAGACATTTAGGAAGTTG
GGAAATTGATTCTGAAATTATCAATTGTATTAATCCATTATTGGTTATGATTTTCGTACC
AATCTTTGAATATGGTATTTATCGTCCATTGGAAAGAAAGAAGATTAATTTCACACTCCT
TCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCATTTTACATTTCAGCTATTAT
TCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATATCGCTTTACAAATACCACA
ATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCACTGGTTTAGAATTTGCCTA
TGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTTGGTTAATTTGTGTTTC
CATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAATTACCAGAATATGTTTT
ATCATTATTATTTGGTTCTGTAANGTTTGTATTCATCTTTATCTTTATCATTATTGCCTA
TAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATGGTGATACT
sequence update 2002.10.25
Translated Amino Acid sequence 
nf**irfkeillvf*y*ilili**ink*ini*INKKKKKKKKXPXXX---

---MDRHLGSWEIDSEIINCINPLLVMIFVPIFEYGIYRPLERKKINFTLLRRMGTGMFL
SVIAFYISAIIQVHIDNSPPESVHIALQIPQYVVLTAAEVLLSITGLEFAYANSPRSMKS
LVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVXFVFIFIFIIIAYRFKEIDQSV
LDELNGDT
Translated Amino Acid sequence (All Frames) 
Frame A:
vifsrfglkkfywffntky*y*ynk*ink*iyk*ikkkkkkkxppxxx---

---lwidi*evgklilklsivlihywl*fsyqslnmvfivhwkerrlishsfvewvpvcf
cl*lhftfqllfkfilitlhqnlyislykyhnmls*lplkfyyqslv*nlpmqihhvl*n
hw*lqvg*fvfplviclmll*ln*lnyqnmfyhyylvl*xlysslslsllpidskklinq
fwmn*mvi

Frame B:
*flvdsv*rnfigflilnintniink*inkyink*kkkkkkkxppxxx---

---yg*tfrklgn*f*nyqly*siigydfrtnl*iwylssigkked*fhtps*ngyryvf
vcdcilhfsyysssy**lstrictyrftntticcldcr*sfiinhwfriclckfttfyei
igncrlvnlcfhw*yv*cfcn*in*itricfiiiiwfcxvcihlylyhycl*iqrn*sis
fg*ikw*y

Frame C:
nf**irfkeillvf*y*ilili**ink*ini*INKKKKKKKKXPXXX---

---MDRHLGSWEIDSEIINCINPLLVMIFVPIFEYGIYRPLERKKINFTLLRRMGTGMFL
SVIAFYISAIIQVHIDNSPPESVHIALQIPQYVVLTAAEVLLSITGLEFAYANSPRSMKS
LVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVXFVFIFIFIIIAYRFKEIDQSV
LDELNGDT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD148 (SFD148Q) /CSM/SF/SFD1-B/SFD148Q.Seq.d/                       1098   0.0
CHR460 (CHR460Q) /CSM/CH/CHR4-C/CHR460Q.Seq.d/                       1098   0.0
CFI809 (CFI809Q) /CSM/CF/CFI8-A/CFI809Q.Seq.d/                       1098   0.0
CFC357 (CFC357Q) /CSM/CF/CFC3-C/CFC357Q.Seq.d/                       1098   0.0
AFO369 (AFO369Q) /CSM/AF/AFO3-C/AFO369Q.Seq.d/                       1098   0.0
AFN577 (AFN577Q) /CSM/AF/AFN5-D/AFN577Q.Seq.d/                       1098   0.0
VHA360 (VHA360Q) /CSM/VH/VHA3-C/VHA360Q.Seq.d/                       1090   0.0
VFD441 (VFD441Q) /CSM/VF/VFD4-B/VFD441Q.Seq.d/                       1090   0.0
SFK509 (SFK509Q) /CSM/SF/SFK5-A/SFK509Q.Seq.d/                       1090   0.0
CFG544 (CFG544Q) /CSM/CF/CFG5-B/CFG544Q.Seq.d/                       1084   0.0
own update 2002.10. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.  1098   0.0    1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   141   7e-48  3
BU496155|BU496155.1 PfESToac04e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    44   0.001  2
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    40   0.010  2
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.011  2
CB073465|CB073465.1 taa18c12.x1 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:OPT1_CAEEL Q17758 HYPOTHETICAL OLIGOPEPTIDE TRANSPORTER C06G8.2. [2] TR:O76185 ;, mRNA sequence.    40   0.013  2
CN624955|CN624955.1 tae68b08.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:OPT1_CAEEL Q17758 HYPOTHETICAL OLIGOPEPTIDE TRANSPORTER C06G8.2. [2] TR:O76185 ;, mRNA sequence.    40   0.013  2
CZ656789|CZ656789.1 OM__Ba0207I11.f OM__Ba Oryza minuta genomic clone OM__Ba0207I11 5', genomic survey sequence.    50   0.064  1
CW783063|CW783063.1 OP__Ba0086J02.r OP__Ba Oryza punctata genomic clone OP__Ba0086J02 3', genomic survey sequence.    50   0.064  1
CW507643|CW507643.1 OP__Ba0009H20.f OP__Ba Oryza punctata genomic clone OP__Ba0009H20 5', genomic survey sequence.    50   0.064  1
dna update 2005.11.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   337   2e-91
CP000769_400(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co...   120   4e-26
CP001359_4119(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...   108   2e-22
CP000251_4007(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...   107   4e-22
CP001032_1516(CP001032|pid:none) Opitutus terrae PB90-1, complet...   104   2e-21
CP001131_4097(CP001131|pid:none) Anaeromyxobacter sp. K, complet...   103   5e-21
BX294154_290(BX294154|pid:none) Rhodopirellula baltica SH 1 comp...    98   2e-19
CP000113_2541(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    95   2e-18
AY094847_1(AY094847|pid:none) Drosophila melanogaster RE06505 fu...    95   2e-18
AE014297_1025(AE014297|pid:none) Drosophila melanogaster chromos...    95   2e-18
protein update 2009. 4.12
PSORT 

 psg: 0.56  gvh: 0.47  alm: 0.14  top: 0.83  tms: 0.33  mit: 0.28  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHR460 is pla
5' end seq. ID CHR460F
5' end seq. 
>CHR460F.Seq
GTAATTTTTAGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAA
TACTAATATAATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAA
AAAAAAAANCCCCCCNANNNNNNNANNNNNNNNNN
Length of 5' end seq. 155
3' end seq. ID CHR460Z
3' end seq. 
>CHR460Z.Seq
NNNNNNNNNNCTATGGATAGACATTTAGGAAGTTGGGAAATTGATTCTGAAATTATCAAT
TGTATTAATCCATTATTGGTTATGATTTTCGTACCAATCTTTGAATATGGTATTTATCGT
CCATTGGAAAGAAAGAAGATTAATTTCACACTCCTTCGTAGAATGGGTACCGGTATGTTT
TTGTCTGTGATTGCATTTTACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCA
CCAGAATCTGTACATATCGCTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAA
GTTTTATTATCAATCACTGGTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAA
TCATTGGTAATTGCAGGTTGGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTT
GTAATTGAATTAATTGAATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAANG
TTTGTATTCATCTTTATCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCA
GTTTTGGATGAATTAAATGGTGATACT
Length of 3' end seq. 567
Connected seq. ID CHR460P
Connected seq. 
>CHR460P.Seq
GTAATTTTTAGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAA
TACTAATATAATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAA
AAAAAAAANCCCCCCNANNNNNNNA----------CTATGGATAGACATTTAGGAAGTTG
GGAAATTGATTCTGAAATTATCAATTGTATTAATCCATTATTGGTTATGATTTTCGTACC
AATCTTTGAATATGGTATTTATCGTCCATTGGAAAGAAAGAAGATTAATTTCACACTCCT
TCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCATTTTACATTTCAGCTATTAT
TCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATATCGCTTTACAAATACCACA
ATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCACTGGTTTAGAATTTGCCTA
TGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTTGGTTAATTTGTGTTTC
CATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAATTACCAGAATATGTTTT
ATCATTATTATTTGGTTCTGTAANGTTTGTATTCATCTTTATCTTTATCATTATTGCCTA
TAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATGGTGATACT
Length of connected seq. 702
Full length Seq ID -
Full length Seq. -
Length of full length seq. -