>CHR455 (CHR455Q) /CSM/CH/CHR4-C/CHR455Q.Seq.d/
XXXXXXXXXXTGNGATTTGCTCTTCACTTAACATGTTGGTCGATGGTGATACCACTACAT
TGGCCGGTGTTTATACATGTGCTTTCTTGGGTGTAATGTCATTGTTTGCCATTGGTAATA
TGTTGTTGAAATATAAACGTTCCTCACTTCGTAGAGATATTAAGTCACCATGGATTGGCG
TATTGATTGCATTGTTTTCCGTTATTCTTGGTTTAATTTCAAATATTATCAAGGATGATT
CAATCGTTTACTACTTTGGTATTTACTTTGGTGTTACCATTTTCATTATCATGTTAATGT
TTATTCGTGCACGTATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTCTAAGTGGTG
CTGGTCGTGATCGTGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAACTCTCAAC
CAGTTGTCTTCTTTGCTTCAAAGGATGATCCAGCCTATTTGAATAAAGCCATCCTTTACA
TTCGTGATAATGAACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGAAGAAGAAT
CAACCGATTCTTTCTCTTCAACTATGGAATTCTTAGATAAATGTTATCCAAAGATTAGAT
TAGATCTCATTCGTGTCAACGCTGAATTCAATGCTTCCACTGTTCAAAAGATCTCTCAAG
AATTAAAGATTGACTTAAACTTTTGTTTCGTATCTTGTATTAAAGACCGTGCATGCATGG
TGATCC

---XICSSLNMLVDGDTTTLAGVYTCAFLGVMSLFAIGNMLLKYKRSSLRRDIKSPWIGV
LIALFSVILGLISNIIKDDSIVYYFGIYFGVTIFIIMLMFIRARILKLFLFFTQIILSGA
GRDRVARWIGDVIKKINSQPVVFFASKDDPAYLNKAILYIRDNEQTNWVRVVHCCNEEES
TDSFSSTMEFLDKCYPKIRLDLIRVNAEFNASTVQKISQELKIDLNFCFVSCIKDRACMV
I

Frame A:
---XICSSLNMLVDGDTTTLAGVYTCAFLGVMSLFAIGNMLLKYKRSSLRRDIKSPWIGV
LIALFSVILGLISNIIKDDSIVYYFGIYFGVTIFIIMLMFIRARILKLFLFFTQIILSGA
GRDRVARWIGDVIKKINSQPVVFFASKDDPAYLNKAILYIRDNEQTNWVRVVHCCNEEES
TDSFSSTMEFLDKCYPKIRLDLIRVNAEFNASTVQKISQELKIDLNFCFVSCIKDRACMV
I


Frame B:
---xfalhltcwsmviplhwpvfihvlswv*chclplvicc*ninvphfveilshhglay
*lhcfplflv*fqilsrmiqsfttlvftlvlpfslsc*clfvhvfssysfsslksf*vvl
vvivllvglvmslkrltlnqlssllqrmiqpi*ikpsftfvimnkpiglesyivvmkknq
pilslqlwns*inviqrld*isfvstlnsmlplfkrslkn*rlt*tfvsylvlktvhaw*
s


Frame C:
---dllft*hvgrw*yhyigrclymcflgcnvivchw*yvvei*tflts*ry*vtmdwri
dcivfryswfnfkyyqg*fnrlllwyllwcyhfhyhvnvysctysqvipflhsnhskwcw
s*sccsldw*ch*kd*lstscllcfkg*sslfe*shplhs***tnqlg*srtll**rrin
rfflfnygilr*mlskd*irshscqr*iqcfhcskdlsrikd*lkllfrily*rpcmhgd

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR455 (CHR455Q) /CSM/CH/CHR4-C/CHR455Q.Seq.d/                       1413   0.0
VFI245 (VFI245Q) /CSM/VF/VFI2-B/VFI245Q.Seq.d/                       1374   0.0
CHG858 (CHG858Q) /CSM/CH/CHG8-C/CHG858Q.Seq.d/                       1372   0.0
VHI612 (VHI612Q) /CSM/VH/VHI6-A/VHI612Q.Seq.d/                       1364   0.0
CHI770 (CHI770Q) /CSM/CH/CHI7-C/CHI770Q.Seq.d/                       1362   0.0
VHJ872 (VHJ872Q) /CSM/VH/VHJ8-C/VHJ872Q.Seq.d/                       1356   0.0
VHK267 (VHK267Q) /CSM/VH/VHK2-C/VHK267Q.Seq.d/                       1350   0.0
SHA452 (SHA452Q) /CSM/SH/SHA4-C/SHA452Q.Seq.d/                       1344   0.0
CHM162 (CHM162Q) /CSM/CH/CHM1-C/CHM162Q.Seq.d/                       1344   0.0
CHP863 (CHP863Q) /CSM/CH/CHP8-C/CHP863Q.Seq.d/                       1334   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.  1376   0.0    1
AC151911|AC151911.2 Ornithorhynchus anatinus chromosome UNK clone OABb-123A1, WORKING DRAFT SEQUENCE, 29 unordered pieces.    50   0.065  1
DU435397|DU435397.1 1098415860821 CHORI-243 Ovis aries genomic clone CH243-238A16, genomic survey sequence.    46   1.0    1
CZ866659|CZ866659.1 OC__Ba0262K19.f OC__Ba Oryza coarctata genomic clone OC__Ba0262K19 5', genomic survey sequence.    32   3.1    3
AC152014|AC152014.1 Otolemur garnettii clone CH256-461N11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   4.0    1
BH693137|BH693137.1 BOHYA56TF BO_2_3_KB Brassica oleracea genomic clone BOHYA56, DNA sequence.    44   4.0    1
AC123030|AC123030.4 Mus musculus chromosome 7 clone RP24-573I5, complete sequence.    44   4.0    1
AC120791|AC120791.13 Mus musculus chromosome 7, clone RP23-56I4, complete sequence.    44   4.0    1
AC129583|AC129583.15 Mus musculus chromosome 15, clone RP23-197P10, complete sequence.    42   6.8    2
BW911964|BW911964.1 Branchiostoma floridae cDNA, neurula clone:bfne043n15, 3' end.    38   7.1    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116925_7(AC116925|pid:none) Dictyostelium discoideum chromosom...   458   e-128
CT025834_28(CT025834|pid:none) uncultured sulfate-reducing bacte...   139   7e-32
CP000685_2780(CP000685|pid:none) Flavobacterium johnsoniae UW101...   122   8e-27
CR522870_2116(CR522870|pid:none) Desulfotalea psychrophila LSv54...   122   1e-26
(P53099) RecName: Full=Vitamin B6 transporter TPN1; AltName: Ful...    41   0.041
AE015927_2246(AE015927|pid:none) Clostridium tetani E88, complet...    36   1.0
CP001108_1739(CP001108|pid:none) Prosthecochloris aestuarii DSM ...    36   1.0
CR380958_263(CR380958|pid:none) Candida glabrata strain CBS138 c...    35   2.3
AE014186_297(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.9
AC149266_12(AC149266|pid:none) Solanum demissum chromosome 5 clo...    35   2.9

 psg: 0.75  gvh: 0.51  alm: 0.19  top: 0.93  tms: 0.27  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for CHR455 is pla

>CHR455Z.Seq
NNNNNNNNNNTGNGATTTGCTCTTCACTTAACATGTTGGTCGATGGTGATACCACTACAT
TGGCCGGTGTTTATACATGTGCTTTCTTGGGTGTAATGTCATTGTTTGCCATTGGTAATA
TGTTGTTGAAATATAAACGTTCCTCACTTCGTAGAGATATTAAGTCACCATGGATTGGCG
TATTGATTGCATTGTTTTCCGTTATTCTTGGTTTAATTTCAAATATTATCAAGGATGATT
CAATCGTTTACTACTTTGGTATTTACTTTGGTGTTACCATTTTCATTATCATGTTAATGT
TTATTCGTGCACGTATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTCTAAGTGGTG
CTGGTCGTGATCGTGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAACTCTCAAC
CAGTTGTCTTCTTTGCTTCAAAGGATGATCCAGCCTATTTGAATAAAGCCATCCTTTACA
TTCGTGATAATGAACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGAAGAAGAAT
CAACCGATTCTTTCTCTTCAACTATGGAATTCTTAGATAAATGTTATCCAAAGATTAGAT
TAGATCTCATTCGTGTCAACGCTGAATTCAATGCTTCCACTGTTCAAAAGATCTCTCAAG
AATTAAAGATTGACTTAAACTTTTGTTTCGTATCTTGTATTAAAGACCGTGCATGCATGG
TGATCC