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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR445
Library CH
(Link to library)
Clone ID CHR445
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16511-1
Original site URL
Representative seq. ID CHR445P
(Link to Original site)
Representative DNA sequence 
>CHR445 (CHR445Q) /CSM/CH/CHR4-B/CHR445Q.Seq.d/
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTNTAAAAAANTAXXXXXXXX
XXAAGAAAAAACCACCAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCTGCACA
AAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAACGTTGCCAA
CAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACAAAGA
TAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAATCGAAATGA
AAACAATGTTAATAAGAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAATCAAAACA
AGGTAGACAAGGTAGAAAATCAAGACAAGAAAAAGAAAATACTAATGATTTATTAGGTCT
TGATATTGGTCTTGGTTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCAGGTTTATT
CGCCAGATTAGGTGTTTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAACCAAGATTT
GGCAGAAGCTGCTTTTGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGTCAAATTAA
TGGTCAACAAGCTGACTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAATTAATCGT
TGAAAATGCTTATGATGCTTATTAAAACACCGTACCAACATCACCACCATCACCACCAAT
AAAATATAATTACAAAACTCATTCAAAATTTATATTAAATTTTATTTTATATCATAAACT
TCAAAAATCAATTAAACAAAATTAAATAAATTTCTATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
tfglssikfplk*y**YYKIIVIVQFVSFLFFFXKKX---

---EKTTNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVANKQNQENKANQENKANQEN
KDNQENGDNQVNDANQEQNRNENNVNKKVEESQSRKSRKSKQGRQGRKSRQEKENTNDLL
GLDIGLGLNGNNQEDAENPGLFARLGVSKRQLVPEEIENQDLAEAAFEITSELEQEVIRQ
INGQQADYTVNPEIVAQAKLIVENAYDAY*ntvptsppsppikynykthskfilnfilyh
klqksikqn*infy
Translated Amino Acid sequence (All Frames) 
Frame A:
dfwfi*yqvsikiiliil*nnsncticiipfffx*kx---

---kkkppinqf*vlkleimlhknkvktlnnllqfklm*tlptnktkktklikktklikk
tkiikkmviik*mmliknkiemktmlirklkkvnqenqenqnkvdkvenqdkkkkilmiy
*vlilvlv*mviikkmlktqvyspd*vflnvnwfqkklktkiwqklllkslln*nkklfv
klmvnkltilliqk*llkln*slkmlmmliktpyqhhhhhhq*niitkliqnly*ilfyi
infknqlnkik*isi

Frame B:
tfglssikfplk*y**YYKIIVIVQFVSFLFFFXKKX---

---rknhq*insky*nwk*cctktk*kl*ticcnsn*ckrcqqtkprkqs*srkqs*srk
qr*srkw**sse*c*srtksk*kqc**es*rksikkikkiktr*tr*kiktrkrky**fi
rs*ywswfkw**srrc*kprfirqircf*tsigsrrn*kprfgrscf*nhf*irtrsyss
n*wsts*lyc*srnscss*inr*kcl*cllkhrtnittittnki*lqnsfkiyikfyfis
*tskin*tklnkfll

Frame C:
llvylvssfh*nninniik***lynlyhsffffxkx---

---EKTTNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVANKQNQENKANQENKANQEN
KDNQENGDNQVNDANQEQNRNENNVNKKVEESQSRKSRKSKQGRQGRKSRQEKENTNDLL
GLDIGLGLNGNNQEDAENPGLFARLGVSKRQLVPEEIENQDLAEAAFEITSELEQEVIRQ
INGQQADYTVNPEIVAQAKLIVENAYDAY*ntvptsppsppikynykthskfilnfilyh
klqksikqn*infy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI538 (SSI538Q) /CSM/SS/SSI5-B/SSI538Q.Seq.d/                        698   0.0
SLI594 (SLI594Q) /CSM/SL/SLI5-D/SLI594Q.Seq.d/                        698   0.0
SLG334 (SLG334Q) /CSM/SL/SLG3-B/SLG334Q.Seq.d/                        698   0.0
SLD240 (SLD240Q) /CSM/SL/SLD2-B/SLD240Q.Seq.d/                        698   0.0
SLD162 (SLD162Q) /CSM/SL/SLD1-C/SLD162Q.Seq.d/                        698   0.0
SLC748 (SLC748Q) /CSM/SL/SLC7-B/SLC748Q.Seq.d/                        698   0.0
SLB429 (SLB429Q) /CSM/SL/SLB4-B/SLB429Q.Seq.d/                        698   0.0
SLA662 (SLA662Q) /CSM/SL/SLA6-C/SLA662Q.Seq.d/                        698   0.0
SFH373 (SFH373Q) /CSM/SF/SFH3-D/SFH373Q.Seq.d/                        698   0.0
SFG667 (SFG667Q) /CSM/SF/SFG6-C/SFG667Q.Seq.d/                        698   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   698   0.0    5
BX323063|BX323063.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP5-1067K7.    48   0.002  2
AC159813|AC159813.1 Mus musculus chromosome 12 clone RP23-386L9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    52   0.020  1
AC137282|AC137282.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    52   0.020  1
AC130077|AC130077.2 Rattus norvegicus clone CH230-165L20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52   0.020  1
AC095837|AC095837.8 Rattus norvegicus clone CH230-10E13, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    52   0.020  1
AC136729|AC136729.7 Mus musculus chromosome 3, clone RP23-175I24, complete sequence.    52   0.020  1
AC131492|AC131492.1 Lytechinus variegatus clone Lv229D15, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    42   0.039  2
AC153186|AC153186.2 Bos taurus clone CH240-29D19, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    50   0.079  1
AC020433|AC020433.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    50   0.079  1
dna update 2005.11.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...   206   6e-52
CP000698_138(CP000698|pid:none) Geobacter uraniireducens Rf4, co...    35   2.4
CP000577_1483(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17...    35   3.1
AL844504_263(AL844504|pid:none) Plasmodium falciparum strain 3D7...    35   3.1
CP000143_1440(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c...    35   3.1
protein update 2009. 4.12
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.29  top: 0.53  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 5.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHR445 is end
5' end seq. ID CHR445F
5' end seq. 
>CHR445F.Seq
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTNTAAAAAANTANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID CHR445Z
3' end seq. 
>CHR445Z.Seq
NNNNNNNNNNAAGAAAAAACCACCAATAAATCAATTCTAAGTATTGAAATTGGAAATAAT
GCTGCACAAAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAAC
GTTGCCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAA
AACAAAGATAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAAT
CGAAATGAAAACAATGTTAATAAGAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAA
TCAAAACAAGGTAGACAAGGTAGAAAATCAAGACAAGAAAAAGAAAATACTAATGATTTA
TTAGGTCTTGATATTGGTCTTGGTTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCA
GGTTTATTCGCCAGATTAGGTGTTTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAAC
CAAGATTTGGCAGAAGCTGCTTTTGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGT
CAAATTAATGGTCAACAAGCTGACTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAA
TTAATCGTTGAAAATGCTTATGATGCTTATTAAAACACCGTACCAACATCACCACCATCA
CCACCAATAAAATATAATTACAAAACTCATTCAAAATTTATATTAAATTTTATTTTATAT
CATAAACTTCAAAAATCAATTAAACAAAATTAAATAAATTTCTATTA
Length of 3' end seq. 767
Connected seq. ID CHR445P
Connected seq. 
>CHR445P.Seq
GACTTTTGGTTTATCTAGTATCAAGTTTCCATTAAAATAATATTAATAATATTATAAAAT
AATAGTAATTGTACAATTTGTATCATTCCTTTTTTTTTTTTNTAAAAAANTA--------
--AAGAAAAAACCACCAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCTGCACA
AAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAACGTTGCCAA
CAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACAAAGA
TAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAATCGAAATGA
AAACAATGTTAATAAGAAAGTTGAAGAAAGTCAATCAAGAAAATCAAGAAAATCAAAACA
AGGTAGACAAGGTAGAAAATCAAGACAAGAAAAAGAAAATACTAATGATTTATTAGGTCT
TGATATTGGTCTTGGTTTAAATGGTAATAATCAAGAAGATGCTGAAAACCCAGGTTTATT
CGCCAGATTAGGTGTTTCTAAACGTCAATTGGTTCCAGAAGAAATTGAAAACCAAGATTT
GGCAGAAGCTGCTTTTGAAATCACTTCTGAATTAGAACAAGAAGTTATTCGTCAAATTAA
TGGTCAACAAGCTGACTATACTGTTAATCCAGAAATAGTTGCTCAAGCTAAATTAATCGT
TGAAAATGCTTATGATGCTTATTAAAACACCGTACCAACATCACCACCATCACCACCAAT
AAAATATAATTACAAAACTCATTCAAAATTTATATTAAATTTTATTTTATATCATAAACT
TCAAAAATCAATTAAACAAAATTAAATAAATTTCTATTA
Length of connected seq. 869
Full length Seq ID -
Full length Seq. -
Length of full length seq. -