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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR432
Library CH
(Link to library)
Clone ID CHR432
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11942-1
Original site URL
Representative seq. ID CHR432P
(Link to Original site)
Representative DNA sequence 
>CHR432 (CHR432Q) /CSM/CH/CHR4-B/CHR432Q.Seq.d/
AATATTATAAAAATGGTTTTAACATTGAAAGAATTAATTAATAATATTTGTCAAACTAAA
GATATAAAATTAATAATTGAACAATTAAGGGAATTAAAACAATCATTTTTAAATTATAAT
AATAGCGAAAATAATGATAATGATAATCAAGTAACAATAACATCAATTTTAAAATTATTA
ATTGAAAATGTTTTAGATAATTGGTATTATGCATTCACAGAATTTGATAAACAATTATTT
GAAAGTTTTTTCTTTTTACCAAATTTATTATCAGAATCATTTATAACATTAACAACATTA
TTATCAGAATATAATTATAATAATAGTAATAGTAATAATAATAATAGTAAAAATAATGAA
GAATTATATTCACAAAAATTAAACTTTTTATTTAATATTTTATATAAATTTATAAATGAT
AATAATAGTAATAATTTATCAAAGTTAATAATTGAATTTCAAAATAGAAAATTTAAAAAA
CATAATAATAATATTGATTTAGAAATTCATGAAACAATTTGGAATTTAATAATAAAATCA
ATTTGTTTGATACCAGATAAATGTAGATCAATTCAATATTATTATAAAAATAATAGAATT
AGGAATATTCAATCACCATTATCATCAGTTAAAGATTATATTTTAGAATTCTTTACCAAT
AATAATTTATTTTATTCCXXXXXXXXXXAATCTGCTAAAGAATTATCAGCTTTAAATTAT
CAACAAAATACTCAAAGACAACAACAACAAGAACAACAACAACAACAGTATGAAGAGTCT
AAAAATAGTATATTTAATATTAATGGTGGTGGTGGTAGTGGTGAAAGTAGTAAATTACCA
ATTTTAAAACAAATTGGTATTGTTAGAAAATGGGGACAAAGAAAGACACCTAGACCAATA
ATAAAATCAAATAGATTCCATAAATTTGTAAAAATTTATTTTTATCCATTATTAAGTGGA
TTTGATAAAGTTACTCAATGTTATGAAGGTGGTGCTAGTGGTGGTGAGATGATGATGGGA
TATGATAGTTTTTTATTAAGTAGATTAATTCATACATTGGGTGTTATTGTTGAATGTGCA
GGTAATTCAAATGATACTAGAATGATATCAAAAGAGTTGGTTAGATTTTTGTGGTCATTT
AAATCACATAGAGATTCAAATGTGAGAAGGTCATTACTTTATTCACTATCAAGAGTATTC
TATAGAGAGACAATTACAAAGTCAGTTATTGATCAAGACTACACTGATGAAATTGAAGAT
ATTGCTCAATTTTTATTNAAGTATCTCAATCCGATTCTGATAAAGACTCAAGAGTTATGG
CAATTGCAACAC
sequence update 2002.10.25
Translated Amino Acid sequence 
NIIKMVLTLKELINNICQTKDIKLIIEQLRELKQSFLNYNNSENNDNDNQVTITSILKLL
IENVLDNWYYAFTEFDKQLFESFFFLPNLLSESFITLTTLLSEYNYNNSNSNNNNSKNNE
ELYSQKLNFLFNILYKFINDNNSNNLSKLIIEFQNRKFKKHNNNIDLEIHETIWNLIIKS
ICLIPDKCRSIQYYYKNNRIRNIQSPLSSVKDYILEFFTNNNLFYS---

---SAKELSALNYQQNTQRQQQQEQQQQQYEESKNSIFNINGGGGSGESSKLPILKQIGI
VRKWGQRKTPRPIIKSNRFHKFVKIYFYPLLSGFDKVTQCYEGGASGGEMMMGYDSFLLS
RLIHTLGVIVECAGNSNDTRMISKELVRFLWSFKSHRDSNVRRSLLYSLSRVFYRETITK
SVIDQDYTDEIEDIAQFLXKYLNPILIKTQELWQLQH
Translated Amino Acid sequence (All Frames) 
Frame A:
NIIKMVLTLKELINNICQTKDIKLIIEQLRELKQSFLNYNNSENNDNDNQVTITSILKLL
IENVLDNWYYAFTEFDKQLFESFFFLPNLLSESFITLTTLLSEYNYNNSNSNNNNSKNNE
ELYSQKLNFLFNILYKFINDNNSNNLSKLIIEFQNRKFKKHNNNIDLEIHETIWNLIIKS
ICLIPDKCRSIQYYYKNNRIRNIQSPLSSVKDYILEFFTNNNLFYS---

---nllknyql*iinkilkdnnnknnnnnsmkslkivylilmvvvvvvkvvnyqf*nklv
llengdkerhldq**nqidsinl*kfifihy*vdlikllnvmkvvlvvvr**wdmivfy*
vd*fihwvlllnvqviqmile*yqkswldfcghlnhieiqm*eghyfihyqeysierqlq
sqllikttlmklkillnfyxsisirf**rlksygncn

Frame B:
il*kwf*h*kn*liifvklki*n**lnn*gn*nnhf*iiiiakimimiik*q*hqf*ny*
lkmf*iigimhsqnlinnylkvfsfyqiyyqnhl*h*qhyyqniiiiiviviiiivkimk
nyihkn*tfylifyinl*miiiviiyqs**lnfkienlkniiiili*kfmkqfgi***nq
fv*yqinvdqfniiikiielgifnhhyhqlkiif*nslpiiiyfi---

---ic*riisfklstkyskttttrtttttv*rv*k*yi*y*wwww*w*k**itnfktnwy
c*kmgtkkdt*tnnkik*ip*icknlflsiikwi**sysml*rwc*ww*dddgi**ffik
*insyigcyc*mcr*fk*y*ndikrvg*ifvvi*it*rfkcekvitlftiksil*rdnyk
vsy*srlh**n*rycsifixvsqsdsdkdsrvmaiat

Frame C:
yykngfnierin**ylsn*rykinn*tikgiktiifkl***rk*****ssnnninfkiin
*kcfr*lvlcihri**tii*kfflftkfiiriiyninniiiri*l***********k**r
iiftkiklfi*yfi*iyk******fikvnn*isk*ki*kt***y*frns*nnlefnnkin
lfdtr*m*insill*k**n*eysitiiis*rlyfrilyq**filf---

---SAKELSALNYQQNTQRQQQQEQQQQQYEESKNSIFNINGGGGSGESSKLPILKQIGI
VRKWGQRKTPRPIIKSNRFHKFVKIYFYPLLSGFDKVTQCYEGGASGGEMMMGYDSFLLS
RLIHTLGVIVECAGNSNDTRMISKELVRFLWSFKSHRDSNVRRSLLYSLSRVFYRETITK
SVIDQDYTDEIEDIAQFLXKYLNPILIKTQELWQLQH
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR432 (CHR432Q) /CSM/CH/CHR4-B/CHR432Q.Seq.d/                       1114   0.0
VHP674 (VHP674Q) /CSM/VH/VHP6-D/VHP674Q.Seq.d/                         46   0.001
VHP483 (VHP483Q) /CSM/VH/VHP4-D/VHP483Q.Seq.d/                         44   0.005
VHK847 (VHK847Q) /CSM/VH/VHK8-B/VHK847Q.Seq.d/                         44   0.005
VHB538 (VHB538Q) /CSM/VH/VHB5-B/VHB538Q.Seq.d/                         44   0.005
SHL182 (SHL182Q) /CSM/SH/SHL1-D/SHL182Q.Seq.d/                         44   0.005
SHC495 (SHC495Q) /CSM/SH/SHC4-D/SHC495Q.Seq.d/                         44   0.005
SHC440 (SHC440Q) /CSM/SH/SHC4-B/SHC440Q.Seq.d/                         44   0.005
CHO563 (CHO563Q) /CSM/CH/CHO5-C/CHO563Q.Seq.d/                         44   0.005
AHO455 (AHO455Q) /CSM/AH/AHO4-C/AHO455Q.Seq.d/                         44   0.005
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   5e-15  16
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38   5e-10  20
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    48   6e-10  17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   1e-09  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   4e-09  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   7e-09  16
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    44   3e-08  14
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   2e-07  18
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   2e-07  16
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    36   8e-07  16
dna update 2005.11.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC135213_1(BC135213|pid:none) Xenopus tropicalis CG31285-PA, mRN...    61   1e-07
(Q08CY4) RecName: Full=Telomere length regulation protein TEL2 h...    61   1e-07
(Q6GPP1) RecName: Full=Telomere length regulation protein TEL2 h...    59   5e-07
BC073072_1(BC073072|pid:none) Xenopus laevis Telomere length reg...    59   5e-07
BC125895_1(BC125895|pid:none) Danio rerio zgc:153824, mRNA (cDNA...    55   4e-06
AK001786_1(AK001786|pid:none) Homo sapiens cDNA FLJ10924 fis, cl...    55   7e-06
AB384510_1(AB384510|pid:none) Synthetic construct DNA, clone: pF...    55   7e-06
(Q9Y4R8) RecName: Full=Telomere length regulation protein TEL2 h...    55   7e-06
AB014583_1(AB014583|pid:none) Homo sapiens mRNA for KIAA0683 pro...    55   7e-06
AL772148_2(AL772148|pid:none) Zebrafish DNA sequence from clone ...    54   1e-05
protein update 2009. 4.12
PSORT 

 psg: 0.74  gvh: 0.34  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for CHR432 is cyt
5' end seq. ID CHR432F
5' end seq. 
>CHR432F.Seq
AATATTATAAAAATGGTTTTAACATTGAAAGAATTAATTAATAATATTTGTCAAACTAAA
GATATAAAATTAATAATTGAACAATTAAGGGAATTAAAACAATCATTTTTAAATTATAAT
AATAGCGAAAATAATGATAATGATAATCAAGTAACAATAACATCAATTTTAAAATTATTA
ATTGAAAATGTTTTAGATAATTGGTATTATGCATTCACAGAATTTGATAAACAATTATTT
GAAAGTTTTTTCTTTTTACCAAATTTATTATCAGAATCATTTATAACATTAACAACATTA
TTATCAGAATATAATTATAATAATAGTAATAGTAATAATAATAATAGTAAAAATAATGAA
GAATTATATTCACAAAAATTAAACTTTTTATTTAATATTTTATATAAATTTATAAATGAT
AATAATAGTAATAATTTATCAAAGTTAATAATTGAATTTCAAAATAGAAAATTTAAAAAA
CATAATAATAATATTGATTTAGAAATTCATGAAACAATTTGGAATTTAATAATAAAATCA
ATTTGTTTGATACCAGATAAATGTAGATCAATTCAATATTATTATAAAAATAATAGAATT
AGGAATATTCAATCACCATTATCATCAGTTAAAGATTATATTTTAGAATTCTTTACCAAT
AATAATTTATTTTATTCCNNNNNNNNNN
Length of 5' end seq. 688
3' end seq. ID CHR432Z
3' end seq. 
>CHR432Z.Seq
NNNNNNNNNNAATCTGCTAAAGAATTATCAGCTTTAAATTATCAACAAAATACTCAAAGA
CAACAACAACAAGAACAACAACAACAACAGTATGAAGAGTCTAAAAATAGTATATTTAAT
ATTAATGGTGGTGGTGGTAGTGGTGAAAGTAGTAAATTACCAATTTTAAAACAAATTGGT
ATTGTTAGAAAATGGGGACAAAGAAAGACACCTAGACCAATAATAAAATCAAATAGATTC
CATAAATTTGTAAAAATTTATTTTTATCCATTATTAAGTGGATTTGATAAAGTTACTCAA
TGTTATGAAGGTGGTGCTAGTGGTGGTGAGATGATGATGGGATATGATAGTTTTTTATTA
AGTAGATTAATTCATACATTGGGTGTTATTGTTGAATGTGCAGGTAATTCAAATGATACT
AGAATGATATCAAAAGAGTTGGTTAGATTTTTGTGGTCATTTAAATCACATAGAGATTCA
AATGTGAGAAGGTCATTACTTTATTCACTATCAAGAGTATTCTATAGAGAGACAATTACA
AAGTCAGTTATTGATCAAGACTACACTGATGAAATTGAAGATATTGCTCAATTTTTATTN
AAGTATCTCAATCCGATTCTGATAAAGACTCAAGAGTTATGGCAATTGCAACAC
Length of 3' end seq. 654
Connected seq. ID CHR432P
Connected seq. 
>CHR432P.Seq
AATATTATAAAAATGGTTTTAACATTGAAAGAATTAATTAATAATATTTGTCAAACTAAA
GATATAAAATTAATAATTGAACAATTAAGGGAATTAAAACAATCATTTTTAAATTATAAT
AATAGCGAAAATAATGATAATGATAATCAAGTAACAATAACATCAATTTTAAAATTATTA
ATTGAAAATGTTTTAGATAATTGGTATTATGCATTCACAGAATTTGATAAACAATTATTT
GAAAGTTTTTTCTTTTTACCAAATTTATTATCAGAATCATTTATAACATTAACAACATTA
TTATCAGAATATAATTATAATAATAGTAATAGTAATAATAATAATAGTAAAAATAATGAA
GAATTATATTCACAAAAATTAAACTTTTTATTTAATATTTTATATAAATTTATAAATGAT
AATAATAGTAATAATTTATCAAAGTTAATAATTGAATTTCAAAATAGAAAATTTAAAAAA
CATAATAATAATATTGATTTAGAAATTCATGAAACAATTTGGAATTTAATAATAAAATCA
ATTTGTTTGATACCAGATAAATGTAGATCAATTCAATATTATTATAAAAATAATAGAATT
AGGAATATTCAATCACCATTATCATCAGTTAAAGATTATATTTTAGAATTCTTTACCAAT
AATAATTTATTTTATTCC----------AATCTGCTAAAGAATTATCAGCTTTAAATTAT
CAACAAAATACTCAAAGACAACAACAACAAGAACAACAACAACAACAGTATGAAGAGTCT
AAAAATAGTATATTTAATATTAATGGTGGTGGTGGTAGTGGTGAAAGTAGTAAATTACCA
ATTTTAAAACAAATTGGTATTGTTAGAAAATGGGGACAAAGAAAGACACCTAGACCAATA
ATAAAATCAAATAGATTCCATAAATTTGTAAAAATTTATTTTTATCCATTATTAAGTGGA
TTTGATAAAGTTACTCAATGTTATGAAGGTGGTGCTAGTGGTGGTGAGATGATGATGGGA
TATGATAGTTTTTTATTAAGTAGATTAATTCATACATTGGGTGTTATTGTTGAATGTGCA
GGTAATTCAAATGATACTAGAATGATATCAAAAGAGTTGGTTAGATTTTTGTGGTCATTT
AAATCACATAGAGATTCAAATGTGAGAAGGTCATTACTTTATTCACTATCAAGAGTATTC
TATAGAGAGACAATTACAAAGTCAGTTATTGATCAAGACTACACTGATGAAATTGAAGAT
ATTGCTCAATTTTTATTNAAGTATCTCAATCCGATTCTGATAAAGACTCAAGAGTTATGG
CAATTGCAACAC
Length of connected seq. 1322
Full length Seq ID -
Full length Seq. -
Length of full length seq. -