CHR428
Library CH
(Link to library)
Clone ID CHR428
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11582-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR428 (CHR428Q) /CSM/CH/CHR4-B/CHR428Q.Seq.d/
AAAATAATATAAATATATACATACTCACCAACAAATTAAATATATTAAAATAAAATATTT
TAAATAAAAATTAAAAAAATTATACCCTTTTCATAAAATTAAAAAATAACAATAAAAAAA
AAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
k*YKYIHTHQQIKYIKIKYFK*klkklypfhkikk*q*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
kii*iytysptn*iy*nkif*ikikkiipfs*n*kitikk---


Frame B:
k*YKYIHTHQQIKYIKIKYFK*klkklypfhkikk*q*kk---


Frame C:
nniniyiltnklnilk*nilnkn*knytlfiklknnnkkk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1132041604.dictycdb.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1132041604.dictycdb.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2005.11.16
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 79,697,454
protein update 2009. 4.12
PSORT

psg: 0.96 gvh: 0.38 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CHR428 is end

5' end seq. ID CHR428F
5' end seq.
>CHR428F.Seq
AAAATAATATAAATATATACATACTCACCAACAAATTAAATATATTAAAATAAAATATTT
TAAATAAAAATTAAAAAAATTATACCCTTTTCATAAAATTAAAAAATAACAATAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -