>CHR426 (CHR426Q) /CSM/CH/CHR4-B/CHR426Q.Seq.d/
XXXXXXXXXXAATTCACAACTTCAACAACAACATCAATTCCAAGCACAAATTCAAGCACA
TTTACAAGGTACAAACCCTAATAACAATAGTAATCAACATACTTTTAAGGAAAATAATGC
TTTATCTTCTTTAGATGAAGATGACGGTGGTATACCTTTAACGGCACATGGTAGAGCCTT
GTTAACTGCAAAATTACAAGGAAAAACTCTTACGCCTCCTTCTAATAATTTAAATAATAA
TATTAATAATAATAATAATAATATTAATAATTTAAATAATAGTACTCATACAGTTATTAA
TCCAAGTTTAGCTTCAACTGGTATCATTACTCCTTATACTCAACTTCCACATTTCGCTTT
TGTTTCAACTTGTTTAATTTTAAGAAATATGTTCGACCCTGAAACTGAAACTGAAGAAAA
TTGGGACCAAGATATTCTATCAGAAACTCATGCAGAATGCTCAACTTTCGGTAAAATAAT
GCACATTTATTTAGATAAAAATACAAAGGGATGTATTTATATTAGATATGATAATAATGA
GTCACCATTGAAGGCAATTCAAAAACTTCATGGTAGATGGTTTTCAAAAAAACAAATTAT
TGCTGAACTCGTTCCAGAGCCAGTATATAAATTACAATTCCCATTTTAATTTTATATAAT
AATAATTAAAATAATAGGTAGTTTTATTAGGTNATTTTAACAATTATGTATTTCAAGTTA
TTATATAGAACTATTTATTNTGTCCAAACTC

---SQLQQQHQFQAQIQAHLQGTNPNNNSNQHTFKENNALSSLDEDDGGIPLTAHGRALL
TAKLQGKTLTPPSNNLNNNINNNNNNINNLNNSTHTVINPSLASTGIITPYTQLPHFAFV
STCLILRNMFDPETETEENWDQDILSETHAECSTFGKIMHIYLDKNTKGCIYIRYDNNES
PLKAIQKLHGRWFSKKQIIAELVPEPVYKLQFPF*fyiiiikiigsfirxf*qlcissyy
ielfixskl

Frame A:
---ihnfnnninskhkfkhiykvqtlitivinillrkimlyll*mkmtvvyl*rhmvepc
*lqnykekllrlllii*iiiliiiiiilii*iivliqlliqv*lqlvslllilnfhisll
fqlv*f*eicstlklklkkigtkifyqklmqnaqlsvk*ctfi*ikiqrdvfildmiims
hh*rqfknfmvdgfqknklllnsfqsqyinynshfnfi***lk**vvllgxfnnyvfqvi
i*nylxcpn


Frame B:
---fttstttsipstnsstftrykp**q**styf*gk*cfiffr*r*rwytfngtw*slv
nckitrknsyasf**fk**y******y**fk**ysysy*skfsfnwyhyslyststfrfc
fnlfnfkkyvrp*n*n*rklgprysirnscrmlnfr*nnahlfr*kykgmyly*i****v
tiegnsktsw*mvfkktnyc*trsrasi*itipililynnn*nnr*fy*viltimyfkll
yrtiyxvqt


Frame C:
---SQLQQQHQFQAQIQAHLQGTNPNNNSNQHTFKENNALSSLDEDDGGIPLTAHGRALL
TAKLQGKTLTPPSNNLNNNINNNNNNINNLNNSTHTVINPSLASTGIITPYTQLPHFAFV
STCLILRNMFDPETETEENWDQDILSETHAECSTFGKIMHIYLDKNTKGCIYIRYDNNES
PLKAIQKLHGRWFSKKQIIAELVPEPVYKLQFPF*fyiiiikiigsfirxf*qlcissyy
ielfixskl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP579 (VHP579Q) /CSM/VH/VHP5-D/VHP579Q.Seq.d/                        636   0.0
CHR426 (CHR426Q) /CSM/CH/CHR4-B/CHR426Q.Seq.d/                        636   0.0
AHI374 (AHI374Q) /CSM/AH/AHI3-D/AHI374Q.Seq.d/                        636   0.0
CHI332 (CHI332Q) /CSM/CH/CHI3-B/CHI332Q.Seq.d/                        628   e-179
SLG618 (SLG618Q) /CSM/SL/SLG6-A/SLG618Q.Seq.d/                         44   0.003
CFJ535 (CFJ535Q) /CSM/CF/CFJ5-B/CFJ535Q.Seq.d/                         44   0.003
AFC589 (AFC589Q) /CSM/AF/AFC5-D/AFC589Q.Seq.d/                         44   0.003
CHI530 (CHI530Q) /CSM/CH/CHI5-B/CHI530Q.Seq.d/                         42   0.012
CFC521 (CFC521Q) /CSM/CF/CFC5-A/CFC521Q.Seq.d/                         42   0.012
SSG230 (SSG230Q) /CSM/SS/SSG2-B/SSG230Q.Seq.d/                         40   0.048

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ301670|AJ301670.1 Dictyostelium discoideum mRNA for STATc transcriptional repressor  (dstC gene).    40   0.013  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44   0.069  5
AC155905|AC155905.1 Mus musculus BAC clone RP24-457D12 from 12, complete sequence.    48   0.27   1
AC168461|AC168461.2 Strongylocentrotus purpuratus clone R3-35G14, WORKING DRAFT SEQUENCE, 24 unordered pieces.    32   0.56   2
AC015298|AC015298.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40   0.62   2
CR388012|CR388012.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-203E20.    46   1.1    1
AC007811|AC007811.5 Drosophila melanogaster chromosome 3 clone BACR45M04 (D721) RPCI-98 45.M.4 map 90C-90D strain y; cn bw sp, WORKING DRAFT SEQUENCE, 82 unordered pieces.    40   1.5    3
AP004483|AP004483.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016.    36   1.9    5
AB013390|AB013390.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9.    44   2.2    2
AE003719|AE003719.3 Drosophila melanogaster chromosome 3R, section 57 of 118 of the complete sequence.    40   2.2    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC005167_12(AC005167|pid:none) Arabidopsis thaliana chromosome 2...   107   4e-22
AY099852_1(AY099852|pid:none) Arabidopsis thaliana putative spli...   107   4e-22
AJ299058_1(AJ299058|pid:none) Cicer arietinum partial mRNA for p...   105   1e-21
AC137522_17(AC137522|pid:none) Medicago truncatula clone mth2-9h...   104   2e-21
AY085618_1(AY085618|pid:none) Arabidopsis thaliana clone 16224 m...   104   2e-21
AY054603_1(AY054603|pid:none) Arabidopsis thaliana splicing fact...   103   6e-21
AC137820_19(AC137820|pid:none) Medicago truncatula clone mth2-15...   101   3e-20
B84546(B84546)probable splicing factor [imported] - Arabidopsis ...   100   6e-20
AB016893_8(AB016893|pid:none) Arabidopsis thaliana genomic DNA, ...   100   8e-20
BT053120_1(BT053120|pid:none) Medicago truncatula clone MTYFL_FM...    99   1e-19

 psg: 0.74  gvh: 0.35  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR426 is cyt

>CHR426Z.Seq
NNNNNNNNNNAATTCACAACTTCAACAACAACATCAATTCCAAGCACAAATTCAAGCACA
TTTACAAGGTACAAACCCTAATAACAATAGTAATCAACATACTTTTAAGGAAAATAATGC
TTTATCTTCTTTAGATGAAGATGACGGTGGTATACCTTTAACGGCACATGGTAGAGCCTT
GTTAACTGCAAAATTACAAGGAAAAACTCTTACGCCTCCTTCTAATAATTTAAATAATAA
TATTAATAATAATAATAATAATATTAATAATTTAAATAATAGTACTCATACAGTTATTAA
TCCAAGTTTAGCTTCAACTGGTATCATTACTCCTTATACTCAACTTCCACATTTCGCTTT
TGTTTCAACTTGTTTAATTTTAAGAAATATGTTCGACCCTGAAACTGAAACTGAAGAAAA
TTGGGACCAAGATATTCTATCAGAAACTCATGCAGAATGCTCAACTTTCGGTAAAATAAT
GCACATTTATTTAGATAAAAATACAAAGGGATGTATTTATATTAGATATGATAATAATGA
GTCACCATTGAAGGCAATTCAAAAACTTCATGGTAGATGGTTTTCAAAAAAACAAATTAT
TGCTGAACTCGTTCCAGAGCCAGTATATAAATTACAATTCCCATTTTAATTTTATATAAT
AATAATTAAAATAATAGGTAGTTTTATTAGGTNATTTTAACAATTATGTATTTCAAGTTA
TTATATAGAACTATTTATTNTGTCCAAACTC