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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFH440
Library AF
(Link to library)
Clone ID AFH440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14991-1
Original site URL
Representative seq. ID AFH440P
(Link to Original site)
Representative DNA sequence 
>AFH440 (AFH440Q) /CSM/AF/AFH4-B/AFH440Q.Seq.d/
TAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAAATAATAATAAATAATA
ATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCACAACTCCATA
TATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGT
TCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACC
AGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATT
CTATCCACCATCCTATTATTAGAAGCAATATCAACTAACAATTATCAATGAGCAACAAAA
AAAAAAXXXXXXXXXXTAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAA
ATAATAATAAATAATAATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATA
CAACCACAACTCCATATATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTC
CACCAATGATGGTAGTTCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAG
GCATGGTCCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTC
CAATGGGCCAACCATTCTATCCACCATCCTATTATTAGAAGCAAT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
kynk*ivnnk**iinnnk****yfkmghhhhyayttttpyimpgvpppvvygapppmmvv
pppmgivqpqvfvqgmvpppvvygapppmmgvpppmgqpfyppsyy*KQYQLTIINEQQK
K---

---NIINK**iinsk**iiinnnnnilkwvitttmliqpqlhiscqeflhqlsmvllhq*
w*fhlqwvsfnhkysfkawslhqlsmvllhq*wefhlqwanhsihhpiirsn
Translated Amino Acid sequence (All Frames) 
Frame A:
*i**insk**ivnnk***iiiiif*ngsspplclynhnsiyharssstsclwcsstndgs
stsngyrsttsirsrhgpstsclwcsstndgsstsngptilstillleaistnnyq*atk
kk---

---*i**insk**ivnnk***iiiiif*ngsspplclynhnsiyharssstsclwcsstn
dgsstsngyrsttsirsrhgpstsclwcsstndgsstsngptilstilllea

Frame B:
kynk*ivnnk**iinnnk****yfkmghhhhyayttttpyimpgvpppvvygapppmmvv
pppmgivqpqvfvqgmvpppvvygapppmmgvpppmgqpfyppsyy*KQYQLTIINEQQK
K---

---kynk*ivnnk**iinnnk****yfkmghhhhyayttttpyimpgvpppvvygapppm
mvvpppmgivqpqvfvqgmvpppvvygapppmmgvpppmgqpfyppsyy*kq

Frame C:
niink**iinsk**iiinnnnnilkwvitttmliqpqlhiscqeflhqlsmvllhq*w*f
hlqwvsfnhkysfkawslhqlsmvllhq*wefhlqwanhsihhpiirsnin*qlsmsnkk
k---

---NIINK**iinsk**iiinnnnnilkwvitttmliqpqlhiscqeflhqlsmvllhq*
w*fhlqwvsfnhkysfkawslhqlsmvllhq*wefhlqwanhsihhpiirsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BC11 (FC-BC11Q) /CSM/FC/FC-BC/FC-BC11Q.Seq.d/                      569   e-161
AFH440 (AFH440Q) /CSM/AF/AFH4-B/AFH440Q.Seq.d/                        569   e-161
SLC426 (SLC426Q) /CSM/SL/SLC4-B/SLC426Q.Seq.d/                        557   e-158
SSC422 (SSC422Q) /CSM/SS/SSC4-A/SSC422Q.Seq.d/                        125   1e-27
SFH328 (SFH328Q) /CSM/SF/SFH3-B/SFH328Q.Seq.d/                         42   0.011
SSK192 (SSK192Q) /CSM/SS/SSK1-D/SSK192Q.Seq.d/                         38   0.18
CHR770 (CHR770Q) /CSM/CH/CHR7-C/CHR770Q.Seq.d/                         38   0.18
CFD736 (CFD736Q) /CSM/CF/CFD7-B/CFD736Q.Seq.d/                         38   0.18
AHK164 (AHK164Q) /CSM/AH/AHK1-C/AHK164Q.Seq.d/                         38   0.18
VSK425 (VSK425Q) /CSM/VS/VSK4-B/VSK425Q.Seq.d/                         34   2.8
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116961|AC116961.2 Dictyostelium discoideum chromosome 2 map 369654-374956 strain AX4, complete sequence.   569   e-158  2
CR369040|CR369040.1 AGENAE Rainbow trout normalized testis library (tcbi) clone  tcbi0020c.m.12, 5prim end (M13R primer).    30   0.002  4
BX251182|BX251182.1 Pinus pinaster xylem EST, clone PP046D04.      34   0.045  3
BG782018|BG782018.1 SEAUMC001975 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0013_B2_F07_MR 5', mRNA sequence.    28   0.089  4
CG823827|CG823827.1 SOYAT60TV LargeInsertSoybeanGenLib Glycine max genomic clone B40I10:MTP5J24, genomic survey sequence.    28   0.094  4
BE209106|BE209106.1 NXNV_139_H05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_139_H05 5', mRNA sequence.    34   0.45   2
BE123722|BE123722.1 NXNV_153_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_153_C06 5', mRNA sequence.    34   0.46   2
CF395957|CF395957.1 RTDS2_19_F03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_19_F03_A021 5', mRNA sequence.    34   0.85   3
AL750308|AL750308.1 Pinus pinaster root EST, clone RN01A02.        34   0.86   3
AL750876|AL750876.1 Pinus pinaster root EST, clone RS01D03.        34   1.0    2
dna update 2004. 5.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000099_1947(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   2.1
CP000301_2702(CP000301|pid:none) Rhodopseudomonas palustris BisB...    35   2.1
CP000086_131(CP000086|pid:none) Burkholderia thailandensis E264 ...    35   2.8
CP000151_3285(CP000151|pid:none) Burkholderia sp. 383 chromosome...    34   4.7
AC139706_7(AC139706|pid:none) Medicago truncatula clone mth2-28n...    33   6.1
CP000141_2109(CP000141|pid:none) Carboxydothermus hydrogenoforma...    33   6.1
CP000440_3166(CP000440|pid:none) Burkholderia ambifaria AMMD chr...    33   8.0
CP001025_3034(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    33   8.0
CP000958_3116(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...    33   8.0
protein update 2009. 4.21
PSORT -
5' end seq. ID AFH440F
5' end seq. 
>AFH440F.Seq
TAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAAATAATAATAAATAATA
ATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCACAACTCCATA
TATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGT
TCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACC
AGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATT
CTATCCACCATCCTATTATTAGAAGCAATATCAACTAACAATTATCAATGAGCAACAAAA
AAAAAA----------
Length of 5' end seq. 366
3' end seq. ID AFH440Z
3' end seq. 
>AFH440Z.Seq
----------TAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAAATAATA
ATAAATAATAATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCA
CAACTCCATATATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAA
TGATGGTAGTTCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAGGCATGG
TCCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTCCAATGG
GCCAACCATTCTATCCACCATCCTATTATTAGAAGCAAT
Length of 3' end seq. 329
Connected seq. ID AFH440P
Connected seq. 
>AFH440P.Seq
TAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAAATAATAATAAATAATA
ATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCACAACTCCATA
TATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGT
TCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACC
AGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATT
CTATCCACCATCCTATTATTAGAAGCAATATCAACTAACAATTATCAATGAGCAACAAAA
AAAAAA----------TAAATATAATAAATAAATAGTAAATAATAAATAGTAAATAATAA
ATAATAATAAATAATAATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATA
CAACCACAACTCCATATATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTC
CACCAATGATGGTAGTTCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAG
GCATGGTCCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTC
CAATGGGCCAACCATTCTATCCACCATCCTATTATTAGAAGCAAT
Length of connected seq. 695
Full length Seq ID -
Full length Seq. -
Length of full length seq. -