CHR419 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR419
Library	CH (Link to library)
Clone ID	CHR419 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR4-A/CHR419Q.Seq.d/
Representative seq. ID	CHR419P (Link to Original site)
Representative DNA sequence	>CHR419 (CHR419Q) /CSM/CH/CHR4-A/CHR419Q.Seq.d/ ATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATGA AATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAA CAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAG ATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTTC ATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATTC TTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACTA TTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGT GCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTAA ATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATT XXXXXXXXXXATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCAT TAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTA CAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTC AAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGC AATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTT TCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGAT GCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGT TGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGA GTAAAATTAAATTACTCAGATTAAATTAATCAAATTAAAACTTAAAATTAATAATAAAGT TTA
sequence update	2002.10.25
Translated Amino Acid sequence	iklklkfnykqqiknsikkncylfyylffyfqywynlkqpilvkpmvtimilfsnq ipkkfkwpeifclerkamkfmwvelkrdlkaiiqsfplfltqiqshflpwllkfvmlql fmkitlmrpvvlssqvasgahglqnqeklkfklenithdisnILKYLIIKFI --- ---IKLKLKFNYKQQIKNSIKKncylfyylffyfqywynlkqpilvkpmvtimilfs nqipkkfkwpeifclerkamkfmwvelkrdlkaiiqsfplfltqiqshflpwllkfvm lqlfmkitlmrpvvlssqvasgahglqnqeklkfklen*itqikliklklkinnkv
Translated Amino Acid sequence (All Frames)	Frame A: iklklkfnykqqiknsikkncylfyylffyfqywynlkqpilvkpmvtimilfsnq ipkkfkwpeifclerkamkfmwvelkrdlkaiiqsfplfltqiqshflpwllkfvmlql fmkitlmrpvvlssqvasgahglqnqeklkfklenithdisnILKYLIIKFI --- ---IKLKLKFNYKQQIKNSIKKncylfyylffyfqywynlkqpilvkpmvtimilfs nqipkkfkwpeifclerkamkfmwvelkrdlkaiiqsfplfltqiqshflpwllkfvm lqlfmkitlmrpvvlssqvasgahglqnqeklkfklenitqikliklklkinnkv Frame B: snnnsiinnklktplkneivicfiissfnifsigtinslfwfknpwpfyfqinr fqknsngqryfvwkgkqsscngnketklskvflysprynhifchgyslcfny lcrrspglwcfpprlllvpmvfkinkrnslnykskikllmikfnqikylni**sl- -- ---snnnsiinnklktplkneivicfiissfnifsigtinslfwfknpwpfyfq inrfqknsngqryfvwkgkqsscngnketklskvflysprynhifchgyslc fnylcrrspglwcfpprlllvpmvfkinkrnslnykskikllrlnsnnlkliikf Frame C: qikikiqlttnklhkmkllfvllslllifsvlvqsetayfglkthgdhndfifkltd skkiqmardilsgkesnevhvmgrikkrpesynpkfsfildpdtitffamaievcdasti yvedhldeacgaflpgcfwcpwsskltreikvtirvklnyslnliklntifnnkvy- -- ---qikikiqlttnklhkmkllfvllslllifsvlvqsetayfglkthgdhndfifk ltdskkiqmardilsgkesnevhvmgrikkrpesynpkfsfildpdtitffamaievcda stiyvedhldeacgaflpgcfwcpwsskltreikvtirvklnysdinqiktn***sl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSM185 (SSM185Q) /CSM/SS/SSM1-D/SSM185Q.Seq.d/ 902 0.0 SSM130 (SSM130Q) /CSM/SS/SSM1-B/SSM130Q.Seq.d/ 902 0.0 SSK794 (SSK794Q) /CSM/SS/SSK7-D/SSK794Q.Seq.d/ 902 0.0 SSK457 (SSK457Q) /CSM/SS/SSK4-C/SSK457Q.Seq.d/ 902 0.0 SSK206 (SSK206Q) /CSM/SS/SSK2-A/SSK206Q.Seq.d/ 902 0.0 SSJ696 (SSJ696Q) /CSM/SS/SSJ6-D/SSJ696Q.Seq.d/ 902 0.0 SSJ576 (SSJ576Q) /CSM/SS/SSJ5-D/SSJ576Q.Seq.d/ 902 0.0 SSI717 (SSI717Q) /CSM/SS/SSI7-A/SSI717Q.Seq.d/ 902 0.0 SSI296 (SSI296Q) /CSM/SS/SSI2-D/SSI296Q.Seq.d/ 902 0.0 SSH879 (SSH879Q) /CSM/SS/SSH8-D/SSH879Q.Seq.d/ 902 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF140044\|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 690 0.0 2 AC115604\|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 149 e-101 9 AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 56 6e-05 6 CT030207\|CT030207.2 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-176G6. 36 0.060 2 BX255913\|BX255913.8 Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20 Contains the gene for a novel protein similar to vertebrate retinal degeneration slow protein (RDS), the gene for a novel protein similar to vertebrate ankyrin repeat SOCS box-containing 2, three novel genes and three CpG islands. 40 0.081 9 AL845326\|AL845326.5 Zebrafish DNA sequence from clone CH211-191D15. 48 0.15 4 CR925754\|CR925754.4 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-148J16. 36 0.18 5 AC116551\|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 32 0.20 11 AL355606\|AL355606.14 Human DNA sequence from clone RP11-90I7 on chromosome X Contains the gene for hepatocellular carcinoma-associated antigen 127 (HCA127) (FLJ12856, FLJ12856, KIAA1166). 36 0.22 2 AC146558\|AC146558.15 Medicago truncatula clone mth2-12a23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 36 0.22 2
dna update	2005.11.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF140044_1(AF140044\|pid:none) Dictyostelium discoideum putative ... 245 2e-63 CP000113_2102(CP000113\|pid:none) Myxococcus xanthus DK 1622, com... 142 2e-32 CP000155_1080(CP000155\|pid:none) Hahella chejuensis KCTC 2396, c... 131 4e-29 AC115604_1(AC115604\|pid:none) Dictyostelium discoideum chromosom... 46 0.002
protein update	2008.11. 9
PSORT	psg: 0.64 gvh: 0.14 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.00 nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: nuclear 12.0 %: cytoskeletal 12.0 %: cytoplasmic 4.0 %: mitochondrial 4.0 %: plasma membrane 4.0 %: endoplasmic reticulum >> prediction for CHR419 is nuc
5' end seq. ID	CHR419F
5' end seq.	>CHR419F.Seq ATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATGA AATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAA CAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAG ATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTTC ATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATTC TTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACTA TTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGT GCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTAA ATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATT NNNNNNNNNN
Length of 5' end seq.	550
3' end seq. ID	CHR419Z
3' end seq.	>CHR419Z.Seq NNNNNNNNNNATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCAT TAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTA CAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTC AAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGC AATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTT TCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGAT GCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGT TGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGA GTAAAATTAAATTACTCAGATTAAATTAATCAAATTAAAACTTAAAATTAATAATAAAGT TTA
Length of 3' end seq.	543
Connected seq. ID	CHR419P
Connected seq.	>CHR419P.Seq ATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCATTAAAAAATGA AATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAA CAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAG ATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTTC ATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATTC TTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACTA TTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGT GCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTAA ATTACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATT ----------ATCAAATTAAAATTAAAATTCAATTATAAACAACAAATTAAAAACTCCAT TAAAAAATGAAATTGTTATTTGTTTTATTATCTCTTCTTTTAATATTTTCAGTATTGGTA CAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTGACCATAATGATTTTATTTTC AAATTAACAGATTCCAAAAAAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGC AATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTT TCCTTTATTCTTGACCCAGATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGAT GCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGT TGCTTCTGGTGCCCATGGTCTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGA GTAAAATTAAATTACTCAGATTAAATTAATCAAATTAAAACTTAAAATTAATAATAAAGT TTA
Length of connected seq.	1073
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas