>CHR410 (CHR410Q) /CSM/CH/CHR4-A/CHR410Q.Seq.d/
ATTGGAATATACATATACATATATATATATAAAGAATATTTAATTAAATTCAATTTTATA
TATATATATAAAAAGATGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTG
AATTTATTAATAAGTTCAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAA
NAAGCTGAAGTCATTGAAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAG
TATAGTCAAATTTATCCAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCC
AGAGATACTTTTGTTGATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAA
ATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAACA
ACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCA
GGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAAT
ACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTA
GATTCAGTACATGGTGCAAAXXXXXXXXXXAATCGATGAAGCCGTTGAATTGGCTCAATC
ATCAGATGTTGTTGTCGTTGTAATTGGTGAACTTCCAGAAGCTGAAACTCCAGGTGATAT
TTATGATCTCTCTATGGATCCAAATGAAGTACTCTTATTACAACAATTGGTTGACACTGG
TAAACCAGTAGTTTTAATTTTGGTTGAAGCTCGTCCAAGAATTTTACCACCAGATCTCGT
CTACAGTTGTGCTGCAGTTTTAATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAAT
CGCCAACATTCTCATGGGTAATGTAAATCCATCTGGTCGTCTTCCTTTAACTTATCCAGG
TACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAAATGGTGTCACCAC
TCCACTCTTCCAATTTGGTGATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGC
CTGTAGCAATTGTAAACCAATCTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCA
ATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAAGACTCTGT
TCTCTTATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGG
TTTCCAAAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGC
CTATGAATTCTCCTTTATTGGTGTCGNATAATAAAATTACTTTAGAANCTGGTCAATTCA
TCATTA

IGIYIYIYIYKEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGE
XAEVIEKPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQ
MTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMIN
TIQTIVIEGSPNKIPMIYGLDSVHGA---

---IDEAVELAQSSDVVVVVIGELPEAETPGDIYDLSMDPNEVLLLQQLVDTGKPVVLIL
VEARPRILPPDLVYSCAAVLMAYLPGSEGGKPIANILMGNVNPSGRLPLTYPGTTGDIGV
PYYHKYSENGVTTPLFQFGDGLSYTTFNYTNLACSNCKPISGQSGNYTGVLGQSYTFTVT
VTNNGNVQGKDSVLLYLSDLWAQVTPEVKMLRGFQKVDLMPAKSQQISFTLNAYEFSFIG
VX**nyfrxwsihh

Frame A:
IGIYIYIYIYKEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGE
XAEVIEKPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQ
MTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMIN
TIQTIVIEGSPNKIPMIYGLDSVHGA---

---nr*sr*igsiircccrcnw*tsrs*nsr*yl*slygsk*stlittig*hw*tssfnf
g*sssknfttrsrlqlccsfnglspr**rw*tnrqhshg*cksiwsssfnlsryyw*yrc
silpqiq*kwchhstlpiw*wsflyhf*lyqsrl*ql*tnlwsiw*lhwcfrsilyfhch
chkqw*rsr*rlcslisl*slgssysrs*nvkrfpks*syas*istnlfypqcl*illyw
criikll*xlvnssl

Frame B:
leytytyiyikni*lnsilyiyikr*kllkvyfychc***iy**vqhmevqle*allevx
klkslknhvlleikensn*sivkfiqrnn*ikkilisclpeilllii*cqkcqslkklvk
*lnwilqh*hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifiilivvfg*i*li
lfkpllskvvqirfq*fmv*iqymvq---

---IDEAVELAQSSDVVVVVIGELPEAETPGDIYDLSMDPNEVLLLQQLVDTGKPVVLIL
VEARPRILPPDLVYSCAAVLMAYLPGSEGGKPIANILMGNVNPSGRLPLTYPGTTGDIGV
PYYHKYSENGVTTPLFQFGDGLSYTTFNYTNLACSNCKPISGQSGNYTGVLGQSYTFTVT
VTNNGNVQGKDSVLLYLSDLWAQVTPEVKMLRGFQKVDLMPAKSQQISFTLNAYEFSFIG
VX**nyfrxwsihh

Frame C:
wnihihiyi*rifn*iqfyiyi*kdeny*kfiftvivdsefinkfniwkfn*skhcwr*x
s*sh*kttyfwk*krtqirv*snlsketiksrky*fhvcqryfc**fnvknvnh*knwsn
dsigyyninitkynyn**nnisilc*nllywiifkftsirwfsr*yssy***clvryd*y
ysnhcyrr*sk*dsndlwfrfstwck---

---smkplnwlnhqmllsl*lvnfqklklqvifmislwiqmkysyynnwltlvnq*f*fw
lklvqefyhqisstvvlqf*wlisqvvkvvnqsptfswvm*ihlvvfl*liqvllvisvf
hittntvkmvsplhssnlvmvfliplltipispvaivnqslvnlvttlvf*vnpilslsl
sqtmvtfkvktlfsyislifglkllqklkc*evskklilcqlnlnksllpsmpmnspllv
sxnkitlexgqfii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR410 (CHR410Q) /CSM/CH/CHR4-A/CHR410Q.Seq.d/                       2531   0.0
VHH688 (VHH688Q) /CSM/VH/VHH6-D/VHH688Q.Seq.d/                       1477   0.0
VHC285 (VHC285Q) /CSM/VH/VHC2-D/VHC285Q.Seq.d/                       1477   0.0
VHC215 (VHC215Q) /CSM/VH/VHC2-A/VHC215Q.Seq.d/                       1469   0.0
VHJ810 (VHJ810Q) /CSM/VH/VHJ8-A/VHJ810Q.Seq.d/                       1461   0.0
VHI472 (VHI472Q) /CSM/VH/VHI4-C/VHI472Q.Seq.d/                       1461   0.0
VHA583 (VHA583Q) /CSM/VH/VHA5-D/VHA583Q.Seq.d/                       1461   0.0
VHA533 (VHA533Q) /CSM/VH/VHA5-B/VHA533Q.Seq.d/                       1461   0.0
CHS391 (CHS391Q) /CSM/CH/CHS3-D/CHS391Q.Seq.d/                       1461   0.0
CHL451 (CHL451Q) /CSM/CH/CHL4-C/CHL451Q.Seq.d/                       1461   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L21014|L21014.1 Dictyostelium discoideum beta-glucosidase mRNA, complete cds.  1084   0.0    1
BG139849|BG139849.1 EST480291 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP14B10 5' sequence, mRNA sequence.    48   0.11   2
CN215175|CN215175.1 28949 Suspension culture Solanum tuberosum cDNA, mRNA sequence.    40   0.26   3
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   0.45   8
BQ969550|BQ969550.1 QHB38N02.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB38N02, mRNA sequence.    48   0.50   1
AC073286|AC073286.5 Homo sapiens chromosome 3 clone RP11-298M2, *** SEQUENCING IN PROGRESS ***, 47 unordered pieces.    48   0.50   1
AC067915|AC067915.2 Homo sapiens clone RP11-131G15, WORKING DRAFT SEQUENCE, 21 unordered pieces.    48   0.50   1
AC022656|AC022656.3 Homo sapiens clone RP11-28P11, WORKING DRAFT SEQUENCE, 22 unordered pieces.    48   0.50   1
AL121949|AL121949.13 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP3-407E4.    48   0.50   1
BF187215|BF187215.1 EST443502 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39D5 5' sequence, mRNA sequence.    46   2.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma...   451   e-126
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   174   5e-42
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   157   1e-36
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ...   155   3e-36
CP000383_2243(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   149   2e-34
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   142   4e-32
CP000388_3699(CP000388|pid:none) Pseudoalteromonas atlantica T6c...   133   1e-29
CP000685_3497(CP000685|pid:none) Flavobacterium johnsoniae UW101...   133   2e-29
CP001251_792(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...   130   1e-28
CP000964_1565(CP000964|pid:none) Klebsiella pneumoniae 342, comp...   129   2e-28

 psg: 0.66  gvh: 0.73  alm: 0.26  top: 0.13  tms: 0.07  mit: 0.21  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 1.25  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CHR410 is cyt

>CHR410F.Seq
ATTGGAATATACATATACATATATATATATAAAGAATATTTAATTAAATTCAATTTTATA
TATATATATAAAAAGATGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTG
AATTTATTAATAAGTTCAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAA
NAAGCTGAAGTCATTGAAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAG
TATAGTCAAATTTATCCAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCC
AGAGATACTTTTGTTGATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAA
ATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAACA
ACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCA
GGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAAT
ACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTA
GATTCAGTACATGGTGCAAANNNNNNNNNN

>CHR410Z.Seq
NNNNNNNNNNAATCGATGAAGCCGTTGAATTGGCTCAATCATCAGATGTTGTTGTCGTTG
TAATTGGTGAACTTCCAGAAGCTGAAACTCCAGGTGATATTTATGATCTCTCTATGGATC
CAAATGAAGTACTCTTATTACAACAATTGGTTGACACTGGTAAACCAGTAGTTTTAATTT
TGGTTGAAGCTCGTCCAAGAATTTTACCACCAGATCTCGTCTACAGTTGTGCTGCAGTTT
TAATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTCTCATGGGTA
ATGTAAATCCATCTGGTCGTCTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTG
TTCCATATTACCACAAATACAGTGAAAATGGTGTCACCACTCCACTCTTCCAATTTGGTG
ATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGCCTGTAGCAATTGTAAACCAA
TCTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCA
CTGTCACAAACAATGGTAACGTTCAAGGTAAAGACTCTGTTCTCTTATATCTCTCTGATC
TTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGGTTTCCAAAAAGTTGATCTTA
TGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGCCTATGAATTCTCCTTTATTG
GTGTCGNATAATAAAATTACTTTAGAANCTGGTCAATTCATCATTA

>CHR410P.Seq
ATTGGAATATACATATACATATATATATATAAAGAATATTTAATTAAATTCAATTTTATA
TATATATATAAAAAGATGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTG
AATTTATTAATAAGTTCAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAA
NAAGCTGAAGTCATTGAAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAG
TATAGTCAAATTTATCCAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCC
AGAGATACTTTTGTTGATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAA
ATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAACA
ACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCA
GGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAAT
ACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTA
GATTCAGTACATGGTGCAAA----------AATCGATGAAGCCGTTGAATTGGCTCAATC
ATCAGATGTTGTTGTCGTTGTAATTGGTGAACTTCCAGAAGCTGAAACTCCAGGTGATAT
TTATGATCTCTCTATGGATCCAAATGAAGTACTCTTATTACAACAATTGGTTGACACTGG
TAAACCAGTAGTTTTAATTTTGGTTGAAGCTCGTCCAAGAATTTTACCACCAGATCTCGT
CTACAGTTGTGCTGCAGTTTTAATGGCTTATCTCCCAGGTAGTGAAGGTGGTAAACCAAT
CGCCAACATTCTCATGGGTAATGTAAATCCATCTGGTCGTCTTCCTTTAACTTATCCAGG
TACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAAATGGTGTCACCAC
TCCACTCTTCCAATTTGGTGATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCGC
CTGTAGCAATTGTAAACCAATCTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCA
ATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAAGACTCTGT
TCTCTTATATCTCTCTGATCTTTGGGCTCAAGTTACTCCAGAAGTTAAAATGTTAAGAGG
TTTCCAAAAAGTTGATCTTATGCCAGCTAAATCTCAACAAATCTCTTTTACCCTCAATGC
CTATGAATTCTCCTTTATTGGTGTCGNATAATAAAATTACTTTAGAANCTGGTCAATTCA
TCATTA