>CHR409 (CHR409Q) /CSM/CH/CHR4-A/CHR409Q.Seq.d/
ATTTTTATTATTATTATTTTATTTATATTAAAATATTATTATTTTCTCCACACAATATAC
ATATTTAATTATTCTATAAATAATTATTTGTTTGAAAAAAAAAAXXXXXXXXXX

IFIIIILFILKYYYFLHTIYIFNYSINNYLFEKK---

Frame A:
IFIIIILFILKYYYFLHTIYIFNYSINNYLFEKK---


Frame B:
fllllfyly*niiifstqytyliil*iiiclkkk---


Frame C:
fyyyyfiyikillfsphnihi*lfyk*lfv*kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR409 (CHR409Q) /CSM/CH/CHR4-A/CHR409Q.Seq.d/                         98   3e-20
SSA690 (SSA690Q) /CSM/SS/SSA6-D/SSA690Q.Seq.d/                         38   0.025
SHH325 (SHH325Q) /CSM/SH/SHH3-B/SHH325Q.Seq.d/                         36   0.099
VSI125 (VSI125Q) /CSM/VS/VSI1-B/VSI125Q.Seq.d/                         32   1.5
VFO695 (VFO695Q) /CSM/VF/VFO6-D/VFO695Q.Seq.d/                         32   1.5
VFO570 (VFO570Q) /CSM/VF/VFO5-C/VFO570Q.Seq.d/                         32   1.5
VFN154 (VFN154Q) /CSM/VF/VFN1-C/VFN154Q.Seq.d/                         32   1.5
VFL769 (VFL769Q) /CSM/VF/VFL7-C/VFL769Q.Seq.d/                         32   1.5
VFK245 (VFK245Q) /CSM/VF/VFK2-B/VFK245Q.Seq.d/                         32   1.5
VFH601 (VFH601Q) /CSM/VF/VFH6-A/VFH601Q.Seq.d/                         32   1.5

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF208003|CF208003.1 CAB20002_IVa_Ra_G06 Cabernet Sauvignon Flower bloom - CAB2 Vitisvinifera cDNA clone CAB20002_IVa_Ra_G06 3', mRNA sequence.    44   0.53   1
CF207923|CF207923.1 CAB20002_IVa_Fa_G06 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20002_IVa_Fa_G06 5', mRNA sequence.    44   0.53   1
AC072055|AC072055.3 Homo sapiens chromosome 7 clone RP11-48C19, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   0.53   1
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    44   0.53   1
BX649198|BX649198.6 Zebrafish DNA sequence from clone DKEY-18L1 in linkage group 9.    44   0.53   1
AC074112|AC074112.8 Homo sapiens BAC clone RP11-204G8 from 7, complete sequence.    44   0.53   1
AE001402|AE001402.1 Plasmodium falciparum 3D7 chromosome 2 section 39 of 73 of the complete sequence.    38   0.81   2
CR848000|CR848000.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-47M2.    30   1.0    2
CT027766|CT027766.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-202M14.    30   1.0    2
CT027805|CT027805.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212M6.    30   1.0    2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 93,593,891

 psg: 0.90  gvh: 0.38  alm: 0.27  top: 0.57  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.88  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHR409 is cyt

>CHR409F.Seq
ATTTTTATTATTATTATTTTATTTATATTAAAATATTATTATTTTCTCCACACAATATAC
ATATTTAATTATTCTATAAATAATTATTTGTTTGAAAAAAAAAANNNNNNNNNN