CHR405
Library CH
(Link to library)
Clone ID CHR405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR405 (CHR405Q) /CSM/CH/CHR4-A/CHR405Q.Seq.d/
XXXXXXXXXXTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCC
AAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAA
ATCAAAAATAATTTAATCATTCTTNCTTTTTAAAAAACT
sequence update 2002. 9.10
Translated Amino Acid sequence
---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ
EQQDKLNQEKNQQLLEQEQNQK*fnhsxflkn


Translated Amino Acid sequence (All Frames)
Frame A:
---XQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENN
EITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE
NEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQ
QENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ
EQQDKLNQEKNQQLLEQEQNQK*fnhsxflkn


Frame B:
---fkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksk
nnkin*ikkkinny*nknkiknnliilxf*kt


Frame C:
---srs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**
nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnpr
ttr*iksrkkstiirtrtkskii*sfxlfkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/ 805 0.0
SHJ524 (SHJ524Q) /CSM/SH/SHJ5-A/SHJ524Q.Seq.d/ 805 0.0
SHG406 (SHG406Q) /CSM/SH/SHG4-A/SHG406Q.Seq.d/ 805 0.0
SHG232 (SHG232Q) /CSM/SH/SHG2-B/SHG232Q.Seq.d/ 805 0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/ 805 0.0
SHD613 (SHD613Q) /CSM/SH/SHD6-A/SHD613Q.Seq.d/ 805 0.0
SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/ 805 0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/ 805 0.0
SHD269 (SHD269Q) /CSM/SH/SHD2-C/SHD269Q.Seq.d/ 805 0.0
SHD221 (SHD221Q) /CSM/SH/SHD2-A/SHD221Q.Seq.d/ 805 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 805 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 9e-05 9
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces. 34 0.003 7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.004 8
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.012 19
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 34 0.013 9
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.017 2
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 36 0.026 10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.041 14
dna update 2005.11.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 308 1e-82
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 39 0.20
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 39 0.20
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.33
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 38 0.44
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 38 0.44
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.57
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.74
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 37 0.97
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 1.3
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHR405 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR405Z
3' end seq.
>CHR405Z.Seq
NNNNNNNNNNTNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCC
AAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAA
ATCAAAAATAATTTAATCATTCTTNCTTTTTAAAAAACT
Length of 3' end seq. 819
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -