CHR386
Library CH
(Link to library)
Clone ID CHR386
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11700-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR386 (CHR386Q) /CSM/CH/CHR3-D/CHR386Q.Seq.d/
GGCCTACTGGAATTGTATATATATATAAAACACATATGTAAAATTTCCATAGACAAAAAT
AATATATTAAGATAATTGTAATAAAAAAAAAAAAAAAAGGGNAANTTAAAAAAAAAAXXX
XXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
GLLELYIYIKHICKISIDKNNILR*l**kkkkkgxlkk---


Translated Amino Acid sequence (All Frames)
Frame A:
GLLELYIYIKHICKISIDKNNILR*l**kkkkkgxlkk---


Frame B:
aywnciyi*ntyvkfp*tkiiy*dncnkkkkkrxx*kk---


Frame C:
ptgivyiykthm*nfhrqk*yikiivikkkkkgxxkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR519 (CHR519Q) /CSM/CH/CHR5-A/CHR519Q.Seq.d/ 109 9e-24
CHR386 (CHR386Q) /CSM/CH/CHR3-D/CHR386Q.Seq.d/ 109 9e-24
CHQ850 (CHQ850Q) /CSM/CH/CHQ8-C/CHQ850Q.Seq.d/ 109 9e-24
CHQ363 (CHQ363Q) /CSM/CH/CHQ3-C/CHQ363Q.Seq.d/ 109 9e-24
CHL629 (CHL629Q) /CSM/CH/CHL6-B/CHL629Q.Seq.d/ 109 9e-24
CHI655 (CHI655Q) /CSM/CH/CHI6-C/CHI655Q.Seq.d/ 109 9e-24
CHE758 (CHE758Q) /CSM/CH/CHE7-C/CHE758Q.Seq.d/ 109 9e-24
CFK349 (CFK349Q) /CSM/CF/CFK3-C/CFK349Q.Seq.d/ 109 9e-24
AHG139 (AHG139Q) /CSM/AH/AHG1-B/AHG139Q.Seq.d/ 109 9e-24
CHL420 (CHL420Q) /CSM/CH/CHL4-A/CHL420Q.Seq.d/ 103 6e-22

own update 2002.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BP081120|BP081120.1 Lotus corniculatus var. japonicus cDNA, clone:MR067a06_f, 3' end. 48 0.038 1
BP059313|BP059313.1 Lotus corniculatus var. japonicus cDNA, clone:GENf023a01, 3' end. 48 0.038 1
AV768927|AV768927.1 Lotus corniculatus var. japonicus cDNA clone:MWL021e10_f, 3' end. 46 0.15 1
BP050702|BP050702.1 Lotus corniculatus var. japonicus cDNA, clone:SPD084d03_f, 3' end. 46 0.15 1
AP007292|AP007292.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 2, clone:LjT45D08, TM0313. 46 0.15 1
AP006120|AP006120.1 Lotus japonicus genomic DNA, chromosome 2, clone:LjT39P22, TM0204. 46 0.15 1
CG487019|CG487019.1 OST22324 Mus musculus 129Sv/Ev Mus musculus genomic clone OST22324, genomic survey sequence. 44 0.60 1
AC124390|AC124390.4 Mus musculus BAC clone RP24-434C11 from chromosome 12, complete sequence. 44 0.60 1
AC156643|AC156643.2 Mus musculus BAC clone RP23-192O3 from chromosome 12, complete sequence. 44 0.60 1
AL844145|AL844145.9 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-403F4. 44 0.60 1
dna update 2005.11.16
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 132,342,810
protein update 2009. 4.12
PSORT

psg: 0.66 gvh: 0.14 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for CHR386 is nuc

5' end seq. ID CHR386F
5' end seq.
>CHR386F.Seq
GGCCTACTGGAATTGTATATATATATAAAACACATATGTAAAATTTCCATAGACAAAAAT
AATATATTAAGATAATTGTAATAAAAAAAAAAAAAAAAGGGNAANTTAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 127
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -