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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR373
Library CH
(Link to library)
Clone ID CHR373
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1|Contig-U13002-1
Original site URL
Representative seq. ID CHR373P
(Link to Original site)
Representative DNA sequence 
>CHR373 (CHR373Q) /CSM/CH/CHR3-D/CHR373Q.Seq.d/
TATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATTTGTAATTT
TATTTATTATATAATTTTTTTTTATAATAGATTTAAATAATCTTTAAAAAAAAAAXXXXX
XXXXXAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCA
CTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGAT
GGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGT
CTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAA
GGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAA
ATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCC
GATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCT
GTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGT
GTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ykiyen*tnilkffylnl*fyllynffl**i*IIFKKK---

---RARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTDNELR
GLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSF
SDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKDALRK
Translated Amino Acid sequence (All Frames) 
Frame A:
ykiyen*tnilkffylnl*fyllynffl**i*IIFKKK---

---ks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr**ts
wshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwlst*fl
fr*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*rctp*
n

Frame B:
ikfmkikltf*nffi*icnfiyyiiffynrfk*slkkk---

---RARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTDNELR
GLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSF
SDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKDALRK

Frame C:
*nl*kln*hskiflfkfvilfii*fffiidlnnl*kk---

---elemnqingifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*pimnfv
vssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvihmipf
piiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwisln*vspifsvvrlnqsikmhsvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ275 (VHQ275Q) /CSM/VH/VHQ2-D/VHQ275Q.Seq.d/                       1059   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1059   0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/                       1059   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1059   0.0
VHN486 (VHN486Q) /CSM/VH/VHN4-D/VHN486Q.Seq.d/                       1059   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1059   0.0
VHM581 (VHM581Q) /CSM/VH/VHM5-D/VHM581Q.Seq.d/                       1059   0.0
VHL594 (VHL594Q) /CSM/VH/VHL5-D/VHL594Q.Seq.d/                       1059   0.0
VHJ588 (VHJ588Q) /CSM/VH/VHJ5-D/VHJ588Q.Seq.d/                       1059   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1059   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1059   0.0    1
CX538721|CX538721.1 s13dNF0IG03GS020_460694 Germinating Seed Medicago truncatula cDNA, mRNA sequence.    36   0.38   3
BQ243210|BQ243210.1 TaE15017G06F TaE15 Triticum aestivum cDNA clone TaE15017G06F, mRNA sequence.    46   0.92   1
AZ133188|AZ133188.1 OSJNBb0108P21r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone OSJNBb0108P21r, genomic survey sequence.    46   0.92   1
AP008209|AP008209.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3.    46   0.92   1
AC144491|AC144491.1 Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence.    46   0.92   1
AC073556|AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.    46   0.92   1
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   3.6    1
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   3.6    1
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   3.6    1
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   380   e-104
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   380   e-104
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   131   2e-29
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   129   6e-29
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   127   3e-28
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   127   4e-28
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   126   5e-28
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   126   6e-28
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   125   8e-28
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   125   8e-28
protein update 2009. 4.12
PSORT 

 psg: 0.57  gvh: 0.51  alm: 0.25  top: 0.47  tms: 0.27  mit: 0.25  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for CHR373 is end
5' end seq. ID CHR373F
5' end seq. 
>CHR373F.Seq
TATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATTTGTAATTT
TATTTATTATATAATTTTTTTTTATAATAGATTTAAATAATCTTTAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID CHR373Z
3' end seq. 
>CHR373Z.Seq
NNNNNNNNNNAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTA
TGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTC
ATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTC
GTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTA
GTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGT
CTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCT
TTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTT
GGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAAT
TAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTA
AAAT
Length of 3' end seq. 544
Connected seq. ID CHR373P
Connected seq. 
>CHR373P.Seq
TATAAAATTTATGAAAATTAAACTAACATTCTAAAATTTTTTTATTTAAATTTGTAATTT
TATTTATTATATAATTTTTTTTTATAATAGATTTAAATAATCTTTAAAAAAAAAA-----
-----AAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCA
CTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGAT
GGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGT
CTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAA
GGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAA
ATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCC
GATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCT
GTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGT
GTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGATGCACTCCGTAAAAT
Length of connected seq. 649
Full length Seq ID -
Full length Seq. -
Length of full length seq. -