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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR372
Library CH
(Link to library)
Clone ID CHR372
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR372P
(Link to Original site)
Representative DNA sequence 
>CHR372 (CHR372Q) /CSM/CH/CHR3-C/CHR372Q.Seq.d/
TATAGTTTTTTAAGAATTGGTATTTATATATTAAAAATATAGATTATAGATTTTATAACA
NATNCATTTTTTTATTATATNCTTCTTTTTTTTTTTTTAAAAAAATAAXXXXXXXXXXTA
TTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTATTAGAAAGTACTCAACCAG
AATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGATGCTGCTACTCTTTCATTTA
ATCAATCATCTTCTGAAATTAAATTATTAAGAGCTGGTTTAATTAAATTAGAAAAAGAAA
TTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGATGATGAAACTATTAATAATA
ATGGTGAAGATGATATAAATAATACCTCTAGTGATGAAAAAACTGAAGGTCAACAACAAA
GACAAGGAGAAGAAGAAGAAAATGATGAAAGTGAATCAACTGGTAATAGTTTTGCTGATA
GTTTAAAGAAAAAGAAATCTCAAGTTAATACAAATTCAACATCAGATTCAAAACAATCAT
TAGAACCACTTAAAGATGATGATCCATTAAAATTGAAATTGTCAGAATTTTTATTAGCAT
CAAAGACAGAATTGGATGATACTGAAACTTTGATAGCAGAGACAGAGGTTCTCTTTAAAT
CGATTTGTAAATTCTTTGGTGAGGATAGTACAAAAATTCAACCAGAAGAATTTTTAGCAA
TCTTTAAAAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTGGAAATNAAAAATCC
sequence update 2002.10.25
Translated Amino Acid sequence 
*FFKNWYLYIKNIDYRFYNXXIFLLYXSFFFFKKI---

---IREKYTLVHYLIELLESTQPELLKVFDEIPSVVDAATLSFNQSSSEIKLLRAGLIKL
EKEIFVRQPKSVEPKPDDETINNNGEDDINNTSSDEKTEGQQQRQGEEEENDESESTGNS
FADSLKKKKSQVNTNSTSDSKQSLEPLKDDDPLKLKLSEFLLASKTELDDTETLIAETEV
LFKSICKFFGEDSTKIQPEEFLAIFKKFNDKFIMSKKDWKXKI
Translated Amino Acid sequence (All Frames) 
Frame A:
ysflrigiyilki*iidfitxxffyyxllffflkk*---

---ys*kvytsslsh*virkystriiksfr*nsisc*ccysfi*siif*n*iikswfn*i
rkrnfc*ttkis*tktr**ny***w*r*yk*yl***kn*rsttktrrrrrk**k*inw**
fc**fkekeiss*ykfnirfktiirtt*r**sikieivrifisikdrig*y*nfdsrdrg
sl*idl*ilw*g*yknstrrifsnl*kv***iynv*kglexkn

Frame B:
ivf*elvfiy*kyrl*il*xxhffiixfffff*kn---

---IREKYTLVHYLIELLESTQPELLKVFDEIPSVVDAATLSFNQSSSEIKLLRAGLIKL
EKEIFVRQPKSVEPKPDDETINNNGEDDINNTSSDEKTEGQQQRQGEEEENDESESTGNS
FADSLKKKKSQVNTNSTSDSKQSLEPLKDDDPLKLKLSEFLLASKTELDDTETLIAETEV
LFKSICKFFGEDSTKIQPEEFLAIFKKFNDKFIMSKKDWKXKI

Frame C:
*FFKNWYLYIKNIDYRFYNXXIFLLYXSFFFFKKI---

---fvksih*fiislsy*kvlnqny*kfsmkfhqllmlllfhlinhllklny*elv*ln*
kkkflldnqnqlnqnqmmklliimvkmi*iiplvmkklkvnnkdkekkkkmmkvnqlviv
lliv*rkrnlkliqiqhqiqnnh*nhlkmmih*n*ncqnfy*hqrqnwmilkl**qrqrf
slnrfvnslvrivqkfnqknf*qslkslminl*clkrignxks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR372 (CHR372Q) /CSM/CH/CHR3-C/CHR372Q.Seq.d/                       1306   0.0
CHI625 (CHI625Q) /CSM/CH/CHI6-B/CHI625Q.Seq.d/                       1306   0.0
AFM619 (AFM619Q) /CSM/AF/AFM6-A/AFM619Q.Seq.d/                       1298   0.0
CHO112 (CHO112Q) /CSM/CH/CHO1-A/CHO112Q.Seq.d/                       1285   0.0
SLE344 (SLE344Q) /CSM/SL/SLE3-B/SLE344Q.Seq.d/                       1283   0.0
SHA414 (SHA414Q) /CSM/SH/SHA4-A/SHA414Q.Seq.d/                       1074   0.0
CHR732 (CHR732Q) /CSM/CH/CHR7-B/CHR732Q.Seq.d/                        549   e-155
CHM586 (CHM586Q) /CSM/CH/CHM5-D/CHM586Q.Seq.d/                        535   e-151
CHF163 (CHF163Q) /CSM/CH/CHF1-C/CHF163Q.Seq.d/                        521   e-147
CHR544 (CHR544Q) /CSM/CH/CHR5-B/CHR544Q.Seq.d/                        474   e-132
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ812734|AJ812734.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia4  (drf4 gene).  1283   0.0    1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   1e-05  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   2e-05  11
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34   2e-04  11
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    32   4e-04  15
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    38   0.001  18
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    34   0.002  14
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    40   0.002  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.002  17
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    38   0.003  11
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate...   320   3e-86
AK021890_1(AK021890|pid:none) Homo sapiens cDNA FLJ11828 fis, cl...    51   3e-05
BC076585_1(BC076585|pid:none) Mus musculus dishevelled associate...    51   5e-05
(Q8BPM0) RecName: Full=Disheveled-associated activator of morpho...    51   5e-05
(Q9Y4D1) RecName: Full=Disheveled-associated activator of morpho...    50   8e-05
AL031640_2(AL031640|pid:none) Drosophila melanogaster cosmid clo...    50   1e-04
AY118439_1(AY118439|pid:none) Drosophila melanogaster RH61354 fu...    50   1e-04
AE014298_186(AE014298|pid:none) Drosophila melanogaster chromoso...    50   1e-04
AE014298_187(AE014298|pid:none) Drosophila melanogaster chromoso...    50   1e-04
BT021242_1(BT021242|pid:none) Drosophila melanogaster RE67944 fu...    50   1e-04
protein update 2009. 4.12
PSORT 

 psg: 0.49  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial

>> prediction for CHR372 is cyt
5' end seq. ID CHR372F
5' end seq. 
>CHR372F.Seq
TATAGTTTTTTAAGAATTGGTATTTATATATTAAAAATATAGATTATAGATTTTATAACA
NATNCATTTTTTTATTATATNCTTCTTTTTTTTTTTTTAAAAAAATAANNNNNNNNNN
Length of 5' end seq. 118
3' end seq. ID CHR372Z
3' end seq. 
>CHR372Z.Seq
NNNNNNNNNNTATTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTATTAGAAA
GTACTCAACCAGAATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGATGCTGCTA
CTCTTTCATTTAATCAATCATCTTCTGAAATTAAATTATTAAGAGCTGGTTTAATTAAAT
TAGAAAAAGAAATTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGATGATGAAA
CTATTAATAATAATGGTGAAGATGATATAAATAATACCTCTAGTGATGAAAAAACTGAAG
GTCAACAACAAAGACAAGGAGAAGAAGAAGAAAATGATGAAAGTGAATCAACTGGTAATA
GTTTTGCTGATAGTTTAAAGAAAAAGAAATCTCAAGTTAATACAAATTCAACATCAGATT
CAAAACAATCATTAGAACCACTTAAAGATGATGATCCATTAAAATTGAAATTGTCAGAAT
TTTTATTAGCATCAAAGACAGAATTGGATGATACTGAAACTTTGATAGCAGAGACAGAGG
TTCTCTTTAAATCGATTTGTAAATTCTTTGGTGAGGATAGTACAAAAATTCAACCAGAAG
AATTTTTAGCAATCTTTAAAAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTGGA
AATNAAAAATCC
Length of 3' end seq. 672
Connected seq. ID CHR372P
Connected seq. 
>CHR372P.Seq
TATAGTTTTTTAAGAATTGGTATTTATATATTAAAAATATAGATTATAGATTTTATAACA
NATNCATTTTTTTATTATATNCTTCTTTTTTTTTTTTTAAAAAAATAA----------TA
TTCGTGAAAAGTATACACTAGTTCATTATCTCATTGAGTTATTAGAAAGTACTCAACCAG
AATTATTAAAAGTTTTCGATGAAATTCCATCAGTTGTTGATGCTGCTACTCTTTCATTTA
ATCAATCATCTTCTGAAATTAAATTATTAAGAGCTGGTTTAATTAAATTAGAAAAAGAAA
TTTTTGTTAGACAACCAAAATCAGTTGAACCAAAACCAGATGATGAAACTATTAATAATA
ATGGTGAAGATGATATAAATAATACCTCTAGTGATGAAAAAACTGAAGGTCAACAACAAA
GACAAGGAGAAGAAGAAGAAAATGATGAAAGTGAATCAACTGGTAATAGTTTTGCTGATA
GTTTAAAGAAAAAGAAATCTCAAGTTAATACAAATTCAACATCAGATTCAAAACAATCAT
TAGAACCACTTAAAGATGATGATCCATTAAAATTGAAATTGTCAGAATTTTTATTAGCAT
CAAAGACAGAATTGGATGATACTGAAACTTTGATAGCAGAGACAGAGGTTCTCTTTAAAT
CGATTTGTAAATTCTTTGGTGAGGATAGTACAAAAATTCAACCAGAAGAATTTTTAGCAA
TCTTTAAAAAGTTTAATGATAAATTTATAATGTCTAAAAAGGATTGGAAATNAAAAATCC
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -