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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR368
Library CH
(Link to library)
Clone ID CHR368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13153-1
Original site URL
Representative seq. ID CHR368P
(Link to Original site)
Representative DNA sequence 
>CHR368 (CHR368Q) /CSM/CH/CHR3-C/CHR368Q.Seq.d/
ACTGTTGGCCTACTGGTATTGAATAATTTATACAATCACACATATTCAAACATTTTGTAT
TTTATTATATTTTAATTTTTTTAATAATAAATTACCATAAAAATATATTTTAATAATATT
ATTATTATTTATTTTTTTTTTTTAAAATNATTNATATGTATATTTTTTTTNGTTNATNAA
AAAATTTNAATTATGGNATATAANATTTTTAAATATATATATTAATATATATNAATATAT
TAATATTAATAAAAGGAAAATNTXXXXXXXXXXANNCCNAAAAAANAAAATAATAAAAAA
ATATAAATAAANAAAAAAANAAAAAAATAAATAAAAAAATAAATAAAAATATAAATNAAT
AAATAAATAAATAGATAAATAAANAAATAAATAAAAATATTAATAAAAANAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywy*iiytithiqtfcillyfnffnnklp*kyiliilllfifff*NXXYVYFFXXXK
KFXLWXIXFLNIYINIYXYININKRKX---

---XXKXKIIKKYK*xkkxknk*knk*kykxink*idk*xnk*ky**kxkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvlnnlynhtysnilyfiif*ff***itikiyfnniiiiyffflkxxiciffxvxx
kiximxyxifkyiy*yixiy*y**ken---

---xpkkxnnkki*ixkkxkk*ikk*iki*xnk*inr*ixk*ikilikxkk

Frame B:
llaywy*iiytithiqtfcillyfnffnnklp*kyiliilllfifff*NXXYVYFFXXXK
KFXLWXIXFLNIYINIYXYININKRKX---

---XXKXKIIKKYK*xkkxknk*knk*kykxink*idk*xnk*ky**kxkk

Frame C:
cwptgie*fiqshifkhfvfyyilifliinyhknif**yyyylffffkxixmyiffxxxk
nxnygi*xf*iyiliyxnililikgkx---

---xxkxk**kninkxkxkkinkkinkninx*ink*inkxinkninkxkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR368 (CHR368Q) /CSM/CH/CHR3-C/CHR368Q.Seq.d/                        101   8e-21
SHG763 (SHG763Q) /CSM/SH/SHG7-C/SHG763Q.Seq.d/                         70   3e-11
AHN895 (AHN895Q) /CSM/AH/AHN8-D/AHN895Q.Seq.d/                         70   3e-11
SHD828 (SHD828Q) /CSM/SH/SHD8-B/SHD828Q.Seq.d/                         68   1e-10
SHH887 (SHH887Q) /CSM/SH/SHH8-D/SHH887Q.Seq.d/                         62   7e-09
AHJ232 (AHJ232Q) /CSM/AH/AHJ2-B/AHJ232Q.Seq.d/                         44   0.002
VHB390 (VHB390Q) /CSM/VH/VHB3-D/VHB390Q.Seq.d/                         42   0.007
VFM469 (VFM469Q) /CSM/VF/VFM4-C/VFM469Q.Seq.d/                         42   0.007
VFM163 (VFM163Q) /CSM/VF/VFM1-C/VFM163Q.Seq.d/                         42   0.007
VFM142 (VFM142Q) /CSM/VF/VFM1-B/VFM142Q.Seq.d/                         42   0.007
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ455802|CJ455802.1 Macaca fascicularis mRNA, clone: QflA-21611, 5' end, expressed in brain frontal lobe.    48   0.14   1
BD101568|BD101568.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    48   0.14   1
BD100783|BD100783.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    48   0.14   1
BD021630|BD021630.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    48   0.14   1
BD020845|BD020845.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    48   0.14   1
CJ484644|CJ484644.1 Macaca fascicularis mRNA, clone: QtsA-12192, 5' end, expressed in testis.    46   0.57   1
CJ465860|CJ465860.1 Macaca fascicularis mRNA, clone: QnpA-15067, 5' end, expressed in brain parietal lobe.    46   0.57   1
CJ442543|CJ442543.1 Macaca fascicularis mRNA, clone: QccE-20062, 5' end, expressed in cerebellum cortex.    46   0.57   1
CJ439427|CJ439427.1 Macaca fascicularis mRNA, clone: QccE-16693, 5' end, expressed in cerebellum cortex.    46   0.57   1
CJ484819|CJ484819.1 Macaca fascicularis mRNA, clone: QtsA-12376, 5' end, expressed in testis.    44   2.3    1
dna update 2005.11.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 169,307,415
protein update 2009. 4.12
PSORT 

 psg: 0.84  gvh: 0.31  alm: 0.42  top: 0.60  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHR368 is cyt
5' end seq. ID CHR368F
5' end seq. 
>CHR368F.Seq
ACTGTTGGCCTACTGGTATTGAATAATTTATACAATCACACATATTCAAACATTTTGTAT
TTTATTATATTTTAATTTTTTTAATAATAAATTACCATAAAAATATATTTTAATAATATT
ATTATTATTTATTTTTTTTTTTTAAAATNATTNATATGTATATTTTTTTTNGTTNATNAA
AAAATTTNAATTATGGNATATAANATTTTTAAATATATATATTAATATATATNAATATAT
TAATATTAATAAAAGGAAAATNTNNNNNNNNNN
Length of 5' end seq. 273
3' end seq. ID CHR368Z
3' end seq. 
>CHR368Z.Seq
NNNNNNNNNNANNCCNAAAAAANAAAATAATAAAAAAATATAAATAAANAAAAAAANAAA
AAAATAAATAAAAAAATAAATAAAAATATAAATNAATAAATAAATAAATAGATAAATAAA
NAAATAAATAAAAATATTAATAAAAANAAAAAAAAA
Length of 3' end seq. 156
Connected seq. ID CHR368P
Connected seq. 
>CHR368P.Seq
ACTGTTGGCCTACTGGTATTGAATAATTTATACAATCACACATATTCAAACATTTTGTAT
TTTATTATATTTTAATTTTTTTAATAATAAATTACCATAAAAATATATTTTAATAATATT
ATTATTATTTATTTTTTTTTTTTAAAATNATTNATATGTATATTTTTTTTNGTTNATNAA
AAAATTTNAATTATGGNATATAANATTTTTAAATATATATATTAATATATATNAATATAT
TAATATTAATAAAAGGAAAATNT----------ANNCCNAAAAAANAAAATAATAAAAAA
ATATAAATAAANAAAAAAANAAAAAAATAAATAAAAAAATAAATAAAAATATAAATNAAT
AAATAAATAAATAGATAAATAAANAAATAAATAAAAATATTAATAAAAANAAAAAAAAA
Length of connected seq. 409
Full length Seq ID -
Full length Seq. -
Length of full length seq. -