CHR365
Library CH
(Link to library)
Clone ID CHR365
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16308-1
Original site URL
Representative seq. ID CHR365P
(Link to Original site)
Representative DNA sequence
>CHR365 (CHR365Q) /CSM/CH/CHR3-C/CHR365Q.Seq.d/
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACCTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATAACAAT
GGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAAAAATGATA
GAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAGTTTAGAAA
GTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGGAAAACAAC
CAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAACATTACAAG
CTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATTGAAAAAGAAAT
TTAAAGAAGAAAAGAATTTACAATTTAAATGGAXXXXXXXXXXTTTAGAGATGATGCATA
GAAAATCAATTTCATCACAATCAGTTGAAGTTGGTAGAGAAACTCAAAGTTATTATCCAA
CTATTAATTCAGTTTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATG
ATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCAATACATAGAA
GTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCCTGCAATTGATGAATCCTCAATTA
ATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTG
GTGGTGGTGGTGATGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTT
ATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAG
AGTTTATTCATATTCTATCAATGGAAAGATCTGGTCCTCGTTCAATTAAATTAAGAATTC
ATAATATTGAAAATAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTCTCTT
TTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTG
ATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCC
CTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAACAAACTAAAATTACCT
TATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence
*nkihliiii*ffs*yski**ktfiily*fyyflmkfaih*kmvklnli*fhihivildg
hqq*tniiwvklkvlyhqwfnh*mlnqihlenlfglk*QWWDDMPIEIKNDFIKHVKNDR
IEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPTLQA
QFGYKHVVLNRIHYELKKKFKEEKNLQFKW---

---LEMMHRKSISSQSVEVGRETQSYYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQG
CLEMAIHRSLTYEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSI
NYQHKFQIYQGQDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPIT
FDLNGLFSFIKSIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPI
NTKQTKITLYPSEIKAXKLLIIKI


Translated Amino Acid sequence (All Frames)
Frame A:
ikikfi****fnffhsiqryneklllfyinfiif**sllfikrw*n*tsfnstftl*fwm
dinnerilygss*kyyiingsiikc*ikst*kiclv*nnnggmicqlklkmil*nmlkmi
elnl*mvdg**mmkhvqv*kv*ldnyqmdinllernlennqrvdgklihldihh*hqhyk
lnlvinmly*ivftmn*krnlkkkriynlng---

---frdda*kinfitis*sw*rnskllsny*fslyriskywkkicl****ikrcfksrsr
llgngnt*kfnl*rw*rfrnscn**iln*ctf*mlfr*stikfttiewwwww**y*ktin
*lst*ipnlsrsrfflyvfkifyvktitrvysysingkiwssfn*ikns*y*k**sisnh
f*fkwlilfyqin*in*ri*fifnq*ir***y**yyffssfncwkksfpy*rysnsfqpn
*yktn*nylisirn*snxityh*n

Frame B:
lk*nsfnnnnliffivfkdimknfyyfilillffnevcyslkdgeikphliphshcdsgw
tstmneyymgqvksiissmvqslnvesnpprkfvwseitmvg*yan*n*k*fyktc*k**
n*ickwwmgne**smckfrkcn*tiikwt*iy*reiwkttrewman*siwtfiidtnits
siwl*tcciesysl*iekei*rrkefti*m---

---LEMMHRKSISSQSVEVGRETQSYYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQG
CLEMAIHRSLTYEDGKGLEIPAIDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSI
NYQHKFQIYQGQDSSYMSSKSFMLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPIT
FDLNGLFSFIKSIKSIKEYNLSLINRFVDNNIDNIISSHRSIVGKNLFPIKDTPTRFNPI
NTKQTKITLYPSEIKAXKLLIIKI

Frame C:
*nkihliiii*ffs*yski**ktfiily*fyyflmkfaih*kmvklnli*fhihivildg
hqq*tniiwvklkvlyhqwfnh*mlnqihlenlfglk*QWWDDMPIEIKNDFIKHVKNDR
IEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPTLQA
QFGYKHVVLNRIHYELKKKFKEEKNLQFKW---

---*r*cienqfhhnqlklveklkviiqlliqfisnlkvlekdlfvimidqevfqvkvkv
awkwqyiev*lmkmvkv*kflqlmnpqlmhvlnvi*mkyhqihnnrmvvvvvmilennql
iininskfikvkilliclqnllc*nhyqslfifyqwkdlvlvqln*efiilkiiinlqsl
li*maysllsnqlnqlkniiyl*sidsliiiliilfllivqllekifsllkilqlvstql
iqnklklpyihqklkqxnylslk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR365 (CHR365Q) /CSM/CH/CHR3-C/CHR365Q.Seq.d/ 1628 0.0
SHB841 (SHB841Q) /CSM/SH/SHB8-B/SHB841Q.Seq.d/ 967 0.0
SHL374 (SHL374Q) /CSM/SH/SHL3-D/SHL374Q.Seq.d/ 896 0.0
SHL251 (SHL251Q) /CSM/SH/SHL2-C/SHL251Q.Seq.d/ 896 0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 896 0.0
SHK514 (SHK514Q) /CSM/SH/SHK5-A/SHK514Q.Seq.d/ 896 0.0
SHJ720 (SHJ720Q) /CSM/SH/SHJ7-A/SHJ720Q.Seq.d/ 896 0.0
SHH474 (SHH474Q) /CSM/SH/SHH4-D/SHH474Q.Seq.d/ 896 0.0
SHH192 (SHH192Q) /CSM/SH/SHH1-D/SHH192Q.Seq.d/ 896 0.0
SHG222 (SHG222Q) /CSM/SH/SHG2-A/SHG222Q.Seq.d/ 896 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF445746|CF445746.1 EST682091 normalized cDNA library of onion Allium cepa cDNA cloneACAHS20, mRNA sequence. 60 6e-08 2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 2e-06 10
BQ593037|BQ593037.1 E012375-024-028-C05-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-028-C05 5-PRIME, mRNA sequence. 44 1e-05 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 2e-05 15
CF196667|CF196667.1 Ir64bi1.6_B04 IR64-BI Oryza sativa (indica cultivar-group) cDNA clone IR64-BI1.6B04 5', mRNA sequence. 56 2e-04 2
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 36 2e-04 17
AR707080|AR707080.1 Sequence 23 from patent US 6933145. 44 5e-04 5
AX392733|AX392733.1 Sequence 23 from Patent WO0212526. 44 5e-04 5
BQ141173|BQ141173.1 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone NF016G07PH 5', mRNA sequence. 58 5e-04 1
BG449666|BG449666.1 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF055D11IN 5', mRNA sequence. 58 5e-04 1
dna update 2005.11.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 92 1e-27
(Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 94 5e-27
BC142656_1(BC142656|pid:none) Homo sapiens mannosidase, alpha, c... 89 7e-26
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,... 89 1e-25
(P27046) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 89 2e-25
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20... 86 6e-25
(P28494) RecName: Full=Alpha-mannosidase 2; EC=3.2.1.11... 87 6e-25
M24353_1(M24353|pid:none) Rattus norvegicus alpha-mannosidase II... 87 6e-25
AF107018_1(AF107018|pid:none) Mus musculus alpha-mannosidase IIx... 83 1e-24
AK161799_1(AK161799|pid:none) Mus musculus 13 days embryo male t... 83 1e-24
protein update 2009. 4.12
PSORT

psg: 0.75 gvh: 0.42 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for CHR365 is cyt

5' end seq. ID CHR365F
5' end seq.
>CHR365F.Seq
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACCTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATAACAAT
GGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAAAAATGATA
GAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAGTTTAGAAA
GTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGGAAAACAAC
CAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAACATTACAAG
CTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATTGAAAAAGAAAT
TTAAAGAAGAAAAGAATTTACAATTTAAATGGANNNNNNNNNN
Length of 5' end seq. 643
3' end seq. ID CHR365Z
3' end seq.
>CHR365Z.Seq
NNNNNNNNNNTTTAGAGATGATGCATAGAAAATCAATTTCATCACAATCAGTTGAAGTTG
GTAGAGAAACTCAAAGTTATTATCCAACTATTAATTCAGTTTATATCGAATCTCAAAGTA
CTGGAAAAAGATTTGTTTGTAATAATGATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAG
GTTGCTTGGAAATGGCAATACATAGAAGTTTAACTTATGAAGATGGTAAAGGTTTAGAAA
TTCCTGCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGATGAAGTAC
CATCAAATTCACAACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAAACAATCAA
TTAATTATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATATGTCTTCAA
AATCTTTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATCAATGGAAAGATCTG
GTCCTCGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAATCAATCTCCAATCA
CTTTTGATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATA
ATTTATCTTTAATCAATAGATTCGTTGATAATAATATTGATAATATTATTTCTTCTCATC
GTTCAATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAA
TTAATACAAAACAAACTAAAATTACCTTATATCCATCAGAAATTAAAGCAATNAAATTAC
TTATCATTAAAATT
Length of 3' end seq. 794
Connected seq. ID CHR365P
Connected seq.
>CHR365P.Seq
ATTAAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATAT
AATGAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTC
ATTAAAAGATGGTGAAATTAAACCTCATTTAATTCCACATTCACATTGTGATTCTGGATG
GACATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGT
TCAATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATAACAAT
GGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAAAAATGATA
GAATTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAGTTTAGAAA
GTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGGAAAACAAC
CAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAACATTACAAG
CTCAATTTGGTTATAAACATGTTGTATTGAATCGTATTCACTATGAATTGAAAAAGAAAT
TTAAAGAAGAAAAGAATTTACAATTTAAATGGA----------TTTAGAGATGATGCATA
GAAAATCAATTTCATCACAATCAGTTGAAGTTGGTAGAGAAACTCAAAGTTATTATCCAA
CTATTAATTCAGTTTATATCGAATCTCAAAGTACTGGAAAAAGATTTGTTTGTAATAATG
ATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAGGTTGCTTGGAAATGGCAATACATAGAA
GTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCCTGCAATTGATGAATCCTCAATTA
ATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCAAATTCACAACAATCGAATGGTG
GTGGTGGTGGTGATGATATTAGAAAACAATCAATTAATTATCAACATAAATTCCAAATTT
ATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCTTTTATGTTAAAACCATTACCAG
AGTTTATTCATATTCTATCAATGGAAAGATCTGGTCCTCGTTCAATTAAATTAAGAATTC
ATAATATTGAAAATAATAATCAATCTCCAATCACTTTTGATTTAAATGGCTTATTCTCTT
TTATCAAATCAATTAAATCAATTAAAGAATATAATTTATCTTTAATCAATAGATTCGTTG
ATAATAATATTGATAATATTATTTCTTCTCATCGTTCAATTGTTGGAAAAAATCTTTTCC
CTATTAAAGATACTCCAACTCGTTTCAACCCAATTAATACAAAACAAACTAAAATTACCT
TATATCCATCAGAAATTAAAGCAATNAAATTACTTATCATTAAAATT
Length of connected seq. 1417
Full length Seq ID -
Full length Seq. -
Length of full length seq. -