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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHR362
Library CH
(Link to library)
Clone ID CHR362
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15938-1
Original site URL
Representative seq. ID CHR362P
(Link to Original site)
Representative DNA sequence 
>CHR362 (CHR362Q) /CSM/CH/CHR3-C/CHR362Q.Seq.d/
GAAATCGACATCGATCCCTTGATCTATTTAAGTTTCTTTAAAAAGAATCGCCTAGACATG
GGATCGAACCATGGACCTAGCGGTTAACAGCCGCTCGCTCTGCCTACTGAGCCATCCAGG
CACTTTTGATGAGATACAACTTAAATTTGCTTTATCCGGTTTTTGTGAGAACAACAACAC
TTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGACTTAAAAAAAATAAAATAA
AATACACTTAGAGTAAACTACTTTATTTCTTTATTTTATTGTAATTTATTTTTTTCTTTT
TTTTGAAAATTTTGCGAAGCAAAATTGAAAAAAAAAGGAAAAAATAATCAGTAAGAGAAA
AAACATCAACAACAACACTTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGAC
TTANAAAAAAAAXXXXXXXXXXCAATATAAATTCATGATCAATATCCCAGATGAGATTTC
CANCAACTTAAAAGCAGAATTGGAAATTCATTTACAAGGAGATGATAAGATAATAATAAG
TAAGAATAAATTCAAAATCCTCACTGACTGCAGAACTCAAGTAATCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nrhrsldlfkfl*kesprhgiepwt*rltaarsay*aiqallmrynlnllypvfvrtttl
flfdyfifhikkrlkknkikyt*skllyffill*fifffflkilrskiekkrkk*SVREK
TSTTTLFLFDYFIFHIKKRLXKK---

---QYKFMINIPDEISXNLKAELEIHLQGDDKIIISKNKFKILTDCRTQVI
Translated Amino Acid sequence (All Frames) 
Frame A:
eididpliylsffkknrldmgsnhgpsg*qplalptepsrhf**dtt*icfirfl*eqqh
ffyliisffi*kkdlkkik*ntlrvnyfislfycnlffsff*kfceaklkkkgknnq*ek
khqqqhffyliisffi*kkdlxkk---

---QYKFMINIPDEISXNLKAELEIHLQGDDKIIISKNKFKILTDCRTQVI

Frame B:
kstsip*si*vslkria*twdrtmdlavnsrslcllshpgtfdeiqlkfalsgfcennnt
ffi*lfhfsykkkt*kk*nkihle*ttlflyfiviyfflffenfakqn*kkkekiiskrk
ninnntffi*lfhfsykkktxkk---

---nins*sisqmrfpxt*kqnwkfiykemir***vrinskssltaelk*s

Frame C:
nrhrsldlfkfl*kesprhgiepwt*rltaarsay*aiqallmrynlnllypvfvrtttl
flfdyfifhikkrlkknkikyt*skllyffill*fifffflkilrskiekkrkk*SVREK
TSTTTLFLFDYFIFHIKKRLXKK---

---i*ihdqypr*dfxqlksrignsftrr**dnnk*e*iqnph*lqnssnq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR362 (CHR362Q) /CSM/CH/CHR3-C/CHR362Q.Seq.d/                        375   e-103
VSI722 (VSI722Q) /CSM/VS/VSI7-A/VSI722Q.Seq.d/                         46   6e-04
VSI714 (VSI714Q) /CSM/VS/VSI7-A/VSI714Q.Seq.d/                         46   6e-04
VSF509 (VSF509Q) /CSM/VS/VSF5-A/VSF509Q.Seq.d/                         46   6e-04
VSF182 (VSF182Q) /CSM/VS/VSF1-D/VSF182Q.Seq.d/                         46   6e-04
VSB877 (VSB877Q) /CSM/VS/VSB8-D/VSB877Q.Seq.d/                         46   6e-04
VSB176 (VSB176Q) /CSM/VS/VSB1-D/VSB176Q.Seq.d/                         46   6e-04
VHL576 (VHL576Q) /CSM/VH/VHL5-D/VHL576Q.Seq.d/                         46   6e-04
VHG772 (VHG772Q) /CSM/VH/VHG7-C/VHG772Q.Seq.d/                         46   6e-04
VHC487 (VHC487Q) /CSM/VH/VHC4-D/VHC487Q.Seq.d/                         46   6e-04
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF298209|AF298209.1 Dictyostelium discoideum non-LTR retrotransposon TRE5-B, group-specific antigen (gag) and polyprotein (pol) genes, complete cds.   276   e-119  6
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   276   e-109  7
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   240   3e-59  1
AC115608|AC115608.3 Dictyostelium discoideum chromosome 2 map 6199819-6206243 strain AX4, complete sequence.    92   1e-54  5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.   163   5e-36  1
AJ277590|AJ277590.1 Dictyostelium discoideum iplA gene for inositol 1,4,5-trisphosphate receptor-like protein (IplA), exons 1-4.   161   1e-35  2
X53443|X53443.1 Dictyostelium discoideum DNA for transfer RNA-Asn and 5'end of  transposable element Tdd-3.   109   2e-22  2
AZ531665|AZ531665.1 ENTBM71TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80   2e-14  2
AZ550787|AZ550787.1 ENTCY17TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80   2e-14  2
AZ550363|AZ550363.1 ENTGE83TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    88   8e-14  2
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF298209_1(AF298209|pid:none) Dictyostelium discoideum non-LTR r...    96   5e-19
X69170_1(X69170|pid:none) D.discoideum mRNA of retrotransposable...    40   0.034
X69171_1(X69171|pid:none) D.discoideum mRNA of retrotransposable...    40   0.034
M24565_1(M24565|pid:none) Dictyostelium discoideum tRNA-Glu-GAA ...    40   0.034
S20105(S20105;S30206;S30208;S30210;S25645) hypothetical protein ...    40   0.034
CP001091_2111(CP001091|pid:none) Actinobacillus pleuropneumoniae...    32   9.3
protein update 2008.11. 9
PSORT 

 psg: 0.93  gvh: 0.28  alm: 0.49  top: 0.70  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHR362 is nuc
5' end seq. ID CHR362F
5' end seq. 
>CHR362F.Seq
GAAATCGACATCGATCCCTTGATCTATTTAAGTTTCTTTAAAAAGAATCGCCTAGACATG
GGATCGAACCATGGACCTAGCGGTTAACAGCCGCTCGCTCTGCCTACTGAGCCATCCAGG
CACTTTTGATGAGATACAACTTAAATTTGCTTTATCCGGTTTTTGTGAGAACAACAACAC
TTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGACTTAAAAAAAATAAAATAA
AATACACTTAGAGTAAACTACTTTATTTCTTTATTTTATTGTAATTTATTTTTTTCTTTT
TTTTGAAAATTTTGCGAAGCAAAATTGAAAAAAAAAGGAAAAAATAATCAGTAAGAGAAA
AAACATCAACAACAACACTTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGAC
TTANAAAAAAAANNNNNNNNNN
Length of 5' end seq. 442
3' end seq. ID CHR362Z
3' end seq. 
>CHR362Z.Seq
NNNNNNNNNNCAATATAAATTCATGATCAATATCCCAGATGAGATTTCCANCAACTTAAA
AGCAGAATTGGAAATTCATTTACAAGGAGATGATAAGATAATAATAAGTAAGAATAAATT
CAAAATCCTCACTGACTGCAGAACTCAAGTAATCAA
Length of 3' end seq. 156
Connected seq. ID CHR362P
Connected seq. 
>CHR362P.Seq
GAAATCGACATCGATCCCTTGATCTATTTAAGTTTCTTTAAAAAGAATCGCCTAGACATG
GGATCGAACCATGGACCTAGCGGTTAACAGCCGCTCGCTCTGCCTACTGAGCCATCCAGG
CACTTTTGATGAGATACAACTTAAATTTGCTTTATCCGGTTTTTGTGAGAACAACAACAC
TTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGACTTAAAAAAAATAAAATAA
AATACACTTAGAGTAAACTACTTTATTTCTTTATTTTATTGTAATTTATTTTTTTCTTTT
TTTTGAAAATTTTGCGAAGCAAAATTGAAAAAAAAAGGAAAAAATAATCAGTAAGAGAAA
AAACATCAACAACAACACTTTTTTTATTTGATTATTTCATTTTTCATATAAAAAAAAGAC
TTANAAAAAAAA----------CAATATAAATTCATGATCAATATCCCAGATGAGATTTC
CANCAACTTAAAAGCAGAATTGGAAATTCATTTACAAGGAGATGATAAGATAATAATAAG
TAAGAATAAATTCAAAATCCTCACTGACTGCAGAACTCAAGTAATCAA
Length of connected seq. 578
Full length Seq ID -
Full length Seq. -
Length of full length seq. -