>CHR344 (CHR344Q) /CSM/CH/CHR3-B/CHR344Q.Seq.d/
XXXXXXXXXXCGTNGTGGTTATGNTGGTGGTGGTGGTGGTAATGGAGGTTNCAGTAACAN
CCGTAATGATAGAAGAGAAGATAAATCAGATTNCTCAATGCATCACCCATACTTCAGCAN
CAATGGTGGTTCATACNATTAGANCATTCACCTCATGTCATTCGTTTAATAAAAAATAAT
AATCCATTTNATTCAAT

---VVVMXVVVVVMEVXVTXVMIEEKINQIXQCITHTSAXMVVHTIRXFTSCHSFNKK**
sixfn

Frame A:
---VVVMXVVVVVMEVXVTXVMIEEKINQIXQCITHTSAXMVVHTIRXFTSCHSFNKK**
sixfn


Frame B:
---xwlxwwwww*wrxq*xp***krr*irxlnaspilqxqwwfixlxhsphvirliknnn
pfxs


Frame C:
---xgyxgggggnggxsnxrndrredksdxsmhhpyfsxnggsyx*xihlmsfv**kiii
hxiq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR344 (CHR344Q) /CSM/CH/CHR3-B/CHR344Q.Seq.d/                        270   7e-72
CHI762 (CHI762Q) /CSM/CH/CHI7-C/CHI762Q.Seq.d/                        248   3e-65
VHK361 (VHK361Q) /CSM/VH/VHK3-C/VHK361Q.Seq.d/                        238   2e-62
VHI547 (VHI547Q) /CSM/VH/VHI5-B/VHI547Q.Seq.d/                        238   2e-62
VHI230 (VHI230Q) /CSM/VH/VHI2-B/VHI230Q.Seq.d/                        238   2e-62
SHF350 (SHF350Q) /CSM/SH/SHF3-C/SHF350Q.Seq.d/                        238   2e-62
CHR309 (CHR309Q) /CSM/CH/CHR3-A/CHR309Q.Seq.d/                        238   2e-62
CHL221 (CHL221Q) /CSM/CH/CHL2-A/CHL221Q.Seq.d/                        238   2e-62
CHK622 (CHK622Q) /CSM/CH/CHK6-A/CHK622Q.Seq.d/                        238   2e-62
CHK561 (CHK561Q) /CSM/CH/CHK5-C/CHK561Q.Seq.d/                        238   2e-62

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC125657|AC125657.4 Rattus norvegicus clone CH230-436N17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    48   0.064  1
AC106527|AC106527.4 Rattus norvegicus clone CH230-26E17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48   0.064  1
AC067792|AC067792.2 Homo sapiens chromosome 4 clone RP11-612A5 map 4, WORKING DRAFT SEQUENCE, 29 unordered pieces.    44   1.00   1
AC096742|AC096742.3 Homo sapiens BAC clone RP11-328K4 from 4, complete sequence.    44   1.00   1
AL935269|AL935269.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   1.00   1
AG472986|AG472986.1 Mus musculus molossinus DNA, clone:MSMg01-364O10.T7, genomic survey sequence.    32   2.3    2
DN806195|DN806195.1 76948050 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-72F17 5', mRNA sequence.    42   4.0    1
CO097468|CO097468.1 GR__Ea21F12.f GR__Ea Gossypium raimondii cDNA clone GR__Ea21F12 5', mRNA sequence.    42   4.0    1
AW690576|AW690576.1 NF031C11ST1F1000 Developing stem Medicago truncatula cDNA clone NF031C11ST 5', mRNA sequence.    42   4.0    1
AX348578|AX348578.1 Sequence 36 from Patent WO0202807.             42   4.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...    58   1e-07
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    30   0.082
AM446570_1(AM446570|pid:none) Vitis vinifera contig VV78X034573....    26   8.4

 psg: 0.96  gvh: 0.49  alm: 0.23  top: 0.33  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for CHR344 is end

>CHR344Z.Seq
NNNNNNNNNNCGTNGTGGTTATGNTGGTGGTGGTGGTGGTAATGGAGGTTNCAGTAACAN
CCGTAATGATAGAAGAGAAGATAAATCAGATTNCTCAATGCATCACCCATACTTCAGCAN
CAATGGTGGTTCATACNATTAGANCATTCACCTCATGTCATTCGTTTAATAAAAAATAAT
AATCCATTTNATTCAAT