CHR331
Library CH
(Link to library)
Clone ID CHR331
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID CHR331P
(Link to Original site)
Representative DNA sequence
>CHR331 (CHR331Q) /CSM/CH/CHR3-B/CHR331Q.Seq.d/
TTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATA
AAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAAXXXXXXXXX
XGTCGTATTCATATTGATATTCAACAACCTCAAGTTTATTCAGATTTTGTTATCACTGTT
ATGTATAGATTATTGGTCGATACACCAGATCGTTTAGAGAGTATATATGAATGTGTTTTA
ACGATCCTTTCAAATCTATCACCCTACATGAAGAATCTTTCAATGGTAACTTGTGTCAAA
TTGATGAAACTCTTTGAATATCTATCAACTCCAAGATTCTTATTCGCAACAAATCATAAC
TATCGTTATGTTGGCTTCTTATTGGAATCATTGAATAATCTATTACAACATCAATATGAA
AGTAACACTCGTTTAATCTATGCAATTCTTAGATGCCAAAATCAATTCTCAAAATTGGCT
TACCTTAAAATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCA
CCAATTTCAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGAA
CCATCAACATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGAT
GAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACT
GGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACA
ACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCACT
CCAAATAAACAACAACTACCTCCACCACCACCACAATAAAAAAATAAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence
ci*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---RIHIDIQQPQVYSDFVITVMYRLLVDTPDRLESIYECVLTILSNLSPYMKNLSMVTC
VKLMKLFEYLSTPRFLFATNHNYRYVGFLLESLNNLLQHQYESNTRLIYAILRCQNQFSK
LAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPSTLSNEKSDKTTDGGDH
QDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESPKLGGDGIDSQS
STPNKQQLPPPPPQ*knkki


Translated Amino Acid sequence (All Frames)
Frame A:
lyiikl*rsivi*hkknkkikk*k*krknkkekrkkk---

---vvfilifnnlkfiqillsllcidywsihqiv*rvymnvf*rsfqiyhpt*rifqw*l
vsn**nslniyqlqdsysqqiitivmlasywnh*iiyyninmkvtlv*smqfldakinsq
nwltlklvl*plqnqwskslnhhqfqpvkkhlvn*infqflknhqhyqmknlikllmvvi
ikmnqfqsqrfkvnqllniqivlvqhhpqqiqehqlsklfqvqhqiknhqnwvvmv*tln
hplqinnnylhhhhnkkikk*

Frame B:
ci*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---sysy*ysttsslfrfcyhcyv*iigrytrsfreyi*mcfndpfksitlheesfngnl
cqidetl*isinskilirnks*lslcwlligiie*sittsi*k*hsfnlcns*mpksilk
iglp*n*scnpfktnganhstitnfnq*rsiw*ik*tfnf*rtiniik*ki**ny*ww*s
sr*infkvkgsk*tny*tsk*ywcntilnkfrntnyqsffkyntksritkigw*wyrlsi
ihsk*ttttsttttikk*kn

Frame C:
vynqtieinsnlt*kk*knkkikikkkk*krkkkkk---

---RIHIDIQQPQVYSDFVITVMYRLLVDTPDRLESIYECVLTILSNLSPYMKNLSMVTC
VKLMKLFEYLSTPRFLFATNHNYRYVGFLLESLNNLLQHQYESNTRLIYAILRCQNQFSK
LAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPSTLSNEKSDKTTDGGDH
QDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESPKLGGDGIDSQS
STPNKQQLPPPPPQ*knkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR331 (CHR331Q) /CSM/CH/CHR3-B/CHR331Q.Seq.d/ 1499 0.0
CHL455 (CHL455Q) /CSM/CH/CHL4-C/CHL455Q.Seq.d/ 1330 0.0
AHF764 (AHF764Q) /CSM/AH/AHF7-C/AHF764Q.Seq.d/ 1203 0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/ 1138 0.0
CHO747 (CHO747Q) /CSM/CH/CHO7-B/CHO747Q.Seq.d/ 1114 0.0
AHQ475 (AHQ475Q) /CSM/AH/AHQ4-D/AHQ475Q.Seq.d/ 1090 0.0
CHR116 (CHR116Q) /CSM/CH/CHR1-A/CHR116Q.Seq.d/ 1088 0.0
AHR268 (AHR268Q) /CSM/AH/AHR2-C/AHR268Q.Seq.d/ 1082 0.0
AHL635 (AHL635Q) /CSM/AH/AHL6-B/AHL635Q.Seq.d/ 1082 0.0
CHO187 (CHO187Q) /CSM/CH/CHO1-D/CHO187Q.Seq.d/ 1078 0.0

own update 2002.10. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence. 54 0.005 1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence. 54 0.005 1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence. 54 0.005 1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence. 54 0.005 1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence. 54 0.005 1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence. 54 0.005 1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence. 54 0.005 1
AC124676|AC124676.7 Mus musculus chromosome 6, clone RP24-93M1, complete sequence. 44 0.007 5
DE281772|DE281772.1 Oryzias latipes DNA, clone: ola1-240B23.R, genomic survey sequence. 52 0.020 1
DE102840|DE102840.1 Oryzias latipes DNA, clone: ola1-136I14.R, genomic survey sequence. 52 0.020 1
dna update 2005.11.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A... 111 3e-23
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet... 111 3e-23
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI... 111 4e-23
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho... 111 4e-23
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ... 111 4e-23
AK074401_1(AK074401|pid:none) Homo sapiens cDNA FLJ23821 fis, cl... 110 8e-23
AE013599_1507(AE013599|pid:none) Drosophila melanogaster chromos... 106 9e-22
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA... 106 1e-21
BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr... 104 3e-21
BC150166_1(BC150166|pid:none) Xenopus laevis hypothetical protei... 101 3e-20
protein update 2009. 4.12
PSORT

psg: 0.18 gvh: 0.46 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CHR331 is nuc

5' end seq. ID CHR331F
5' end seq.
>CHR331F.Seq
TTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATA
AAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHR331Z
3' end seq.
>CHR331Z.Seq
NNNNNNNNNNGTCGTATTCATATTGATATTCAACAACCTCAAGTTTATTCAGATTTTGTT
ATCACTGTTATGTATAGATTATTGGTCGATACACCAGATCGTTTAGAGAGTATATATGAA
TGTGTTTTAACGATCCTTTCAAATCTATCACCCTACATGAAGAATCTTTCAATGGTAACT
TGTGTCAAATTGATGAAACTCTTTGAATATCTATCAACTCCAAGATTCTTATTCGCAACA
AATCATAACTATCGTTATGTTGGCTTCTTATTGGAATCATTGAATAATCTATTACAACAT
CAATATGAAAGTAACACTCGTTTAATCTATGCAATTCTTAGATGCCAAAATCAATTCTCA
AAATTGGCTTACCTTAAAATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACT
CAACCATCACCAATTTCAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATT
TCTGAAGAACCATCAACATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGAT
CATCAAGATGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCA
AATAGTACTGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTT
TCAAGTACAACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAA
TCATCCACTCCAAATAAACAACAACTACCTCCACCACCACCACAATAAAAAAATAAAAAA
ATAA
Length of 3' end seq. 784
Connected seq. ID CHR331P
Connected seq.
>CHR331P.Seq
TTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATA
AAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAA---------
-GTCGTATTCATATTGATATTCAACAACCTCAAGTTTATTCAGATTTTGTTATCACTGTT
ATGTATAGATTATTGGTCGATACACCAGATCGTTTAGAGAGTATATATGAATGTGTTTTA
ACGATCCTTTCAAATCTATCACCCTACATGAAGAATCTTTCAATGGTAACTTGTGTCAAA
TTGATGAAACTCTTTGAATATCTATCAACTCCAAGATTCTTATTCGCAACAAATCATAAC
TATCGTTATGTTGGCTTCTTATTGGAATCATTGAATAATCTATTACAACATCAATATGAA
AGTAACACTCGTTTAATCTATGCAATTCTTAGATGCCAAAATCAATTCTCAAAATTGGCT
TACCTTAAAATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCA
CCAATTTCAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGAA
CCATCAACATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGAT
GAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACT
GGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACA
ACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCACT
CCAAATAAACAACAACTACCTCCACCACCACCACAATAAAAAAATAAAAAAATAA
Length of connected seq. 885
Full length Seq ID -
Full length Seq. -
Length of full length seq. -