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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR327
Library CH
(Link to library)
Clone ID CHR327
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11363-1
Original site URL
Representative seq. ID CHR327P
(Link to Original site)
Representative DNA sequence 
>CHR327 (CHR327Q) /CSM/CH/CHR3-B/CHR327Q.Seq.d/
AAAACATATTGGTAAAATTGTATTAGATCATAGTTGTTCAAATGGTAGTATCGGTAGTGA
TGGATTATTAAATCAACTCATTGAATCAGATAACAATGAAAAGAATCACACAATACTAAA
ATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTATTACAGGTCA
ATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCAACAGAATCATT
TGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAGAACTATTAATCAA
TAAAACAATATCAAGAAAGGATAATAACACTAAATTCCATTTCAAGAGTGTAGATGTTGG
TGATCCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAAATCCAAATATTGA
TAACATTGATTCAATATTCCATTATGCATTCGCTCAAATAACTAAAGAAGTAGAAGAAAT
CGATATTGAATCATTAGATATTTCACATAATGCTAAAACGATGGGTGCAATTAATTTACA
TGAAATTTCAATTGAGAAATCATGGAAATTAAAACAATTTGTTATGGCATCATCGATTGC
ATCATTATTTGGCTCATXXXXXXXXXXGCTGGTGATNATCAANAACCNANTGTAGGATTT
AGCTCAGTATCAGTATTCTTTAATGCATCAAATTGTAAAGAATTTGATGAAGAAACAGTA
ATACCANCAATTGAAAATATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTAGTT
GTTGAANATTTANTAAGAGAAGTAGCAAAAAGAGGTATTCCATCAATGTTAATTAGNCCA
CCAATTATATTCTCACATGAAGAAACAGGTATTGGTCATGATTNTGATTTCTTCCAATTA
ATTATTCAATCATGTTATGCAGTTAAAAAGTATCCAAAAATTGATAAAAACATATTAACA
TCACCAATTGGTTGGATAAGTTTAAATACAATTAAAATGATCGGAAATGAAAAATGTTGG
AATAAATCATCTTCANCATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCAGCAAT
GAACCCTTCATTNTCATTCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAACA
ATGGAAGAATATCATTAATCAATCAAAGATTCTATCATGTGTAAAATTAAAAACATTCCA
TTCATTAGATGATTTATATAATATTTATAACTTGGGTAATGGATTTGGTGTTTCAAAGAA
AACTAAAGAATTATTACAATCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQ
SGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVG
DPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLH
EISIEKSWKLKQFVMASSIASLFGS---

---AGDXQXPXVGFSSVSVFFNASNCKEFDEETVIPXIENINNLPGGYMKSKVVVEXLXR
EVAKRGIPSMLIXPPIIFSHEETGIGHDXDFFQLIIQSCYAVKKYPKIDKNILTSPIGWI
SLNTIKMIGNEKCWNKSSSXSIKYL*fk**sfsnepfixilgkaiwm*ng*i*tmeeyh*
sikdsimckiknipfir*fi*yl*lg*wiwcfken*riiti
Translated Amino Acid sequence (All Frames) 
Frame A:
ktyw*ncirs*lfkw*yr**wiiksth*ir*q*keshntki*fqn*ykkynw*kynyyrs
iryyfrnlkmvn*iftnrii*khyhfikiiikmgvrtinq*nnikkg**h*ipfqecrcw
*sn*nekin*snfirksky**h*fniplcirsnn*rsrrnry*iiryft*c*ndgcn*ft
*nfn*eimeikticygiidciiiwl---

---AGDXQXPXVGFSSVSVFFNASNCKEFDEETVIPXIENINNLPGGYMKSKVVVEXLXR
EVAKRGIPSMLIXPPIIFSHEETGIGHDXDFFQLIIQSCYAVKKYPKIDKNILTSPIGWI
SLNTIKMIGNEKCWNKSSSXSIKYL*fk**sfsnepfixilgkaiwm*ng*i*tmeeyh*
sikdsimckiknipfir*fi*yl*lg*wiwcfken*riiti

Frame B:
KHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQ
SGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVG
DPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLH
EISIEKSWKLKQFVMASSIASLFGS---

---lvxixnxx*dlaqyqyslmhqivknlmkkq*yxqlkiliiyqvvi*kvk*llxix*e
k*qkevfhqc*lxhqlyshmkkqvlvmixissn*lfnhvmqlksiqklikty*hhqlvg*
v*iqlk*semknvginhlxhqlniyslnsevsamnpsxsflekqygcemveyeqwkniin
qskilscvklktfhslddlyniynlgngfgvskktkellqs

Frame C:
nilvkly*iivvqmvvsvvmdy*inslnqitmkritqy*nmiskliqki*lvki*llqvn
qvlf*ks*ng*lnihqqnhlktlsfyqnhh*ngs*ny*sikqyqeriitlnsisrv*mlv
iqlk*enqlikfy*kiqilitliqysimhslk*lkk*kksilnh*ifhimlkrwvqliym
kfqlrnhgn*nnllwhhrlhhylah---

---w*xsxtxcri*lsisil*cikl*ri**rnsntxn*ky**ftrwlyek*ssc*xfxkr
sskkrysinvn*xtnyilt*rnryws*x*flpinysimlcs*kvskn**khinitnwldk
fkyn*ndrk*kmle*iifxin*isiv*ivkfqq*tlhxhswksnmdvkwlnmnngrisli
nqrfyhv*n*khsih*miyiifitwvmdlvfqrklknyynq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR327 (CHR327Q) /CSM/CH/CHR3-B/CHR327Q.Seq.d/                       2418   0.0
VHA580 (VHA580Q) /CSM/VH/VHA5-D/VHA580Q.Seq.d/                       1090   0.0
CHQ193 (CHQ193Q) /CSM/CH/CHQ1-D/CHQ193Q.Seq.d/                        846   0.0
VFA275 (VFA275Q) /CSM/VF/VFA2-D/VFA275Q.Seq.d/                        811   0.0
AHG850 (AHG850Q) /CSM/AH/AHG8-C/AHG850Q.Seq.d/                        569   e-161
AHD242 (AHD242Q) /CSM/AH/AHD2-B/AHD242Q.Seq.d/                        127   5e-28
CFC727 (CFC727Q) /CSM/CF/CFC7-B/CFC727Q.Seq.d/                         70   9e-11
SFH305 (SFH305Q) /CSM/SF/SFH3-A/SFH305Q.Seq.d/                         62   2e-08
CHN782 (CHN782Q) /CSM/CH/CHN7-D/CHN782Q.Seq.d/                         62   2e-08
SLG354 (SLG354Q) /CSM/SL/SLG3-C/SLG354Q.Seq.d/                         52   2e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   103   4e-57  20
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    80   4e-49  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    52   2e-09  2
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   7e-04  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.001  20
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    34   0.001  17
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   0.001  14
AF404306|AF404306.1 Rhizophydium sp. 136 mitochondrion, complete genome.    34   0.004  8
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    34   0.025  12
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.033  13
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   193   1e-47
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   157   1e-36
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   153   1e-35
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   149   2e-34
AC116982_71(AC116982|pid:none) Dictyostelium discoideum chromoso...   145   2e-33
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso...    93   2e-17
AC116963_19(AC116963|pid:none) Dictyostelium discoideum chromoso...    92   3e-17
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso...    92   4e-17
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso...    91   1e-16
(P37693) RecName: Full=Polyketide synthase hetM;  &AE2475(AE2475...    56   2e-06
protein update 2009. 4.12
PSORT 

 psg: 0.80  gvh: 0.54  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHR327 is cyt
5' end seq. ID CHR327F
5' end seq. 
>CHR327F.Seq
AAAACATATTGGTAAAATTGTATTAGATCATAGTTGTTCAAATGGTAGTATCGGTAGTGA
TGGATTATTAAATCAACTCATTGAATCAGATAACAATGAAAAGAATCACACAATACTAAA
ATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTATTACAGGTCA
ATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCAACAGAATCATT
TGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAGAACTATTAATCAA
TAAAACAATATCAAGAAAGGATAATAACACTAAATTCCATTTCAAGAGTGTAGATGTTGG
TGATCCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAAATCCAAATATTGA
TAACATTGATTCAATATTCCATTATGCATTCGCTCAAATAACTAAAGAAGTAGAAGAAAT
CGATATTGAATCATTAGATATTTCACATAATGCTAAAACGATGGGTGCAATTAATTTACA
TGAAATTTCAATTGAGAAATCATGGAAATTAAAACAATTTGTTATGGCATCATCGATTGC
ATCATTATTTGGCTCATNNNNNNNNNN
Length of 5' end seq. 627
3' end seq. ID CHR327Z
3' end seq. 
>CHR327Z.Seq
NNNNNNNNNNGCTGGTGATNATCAANAACCNANTGTAGGATTTAGCTCAGTATCAGTATT
CTTTAATGCATCAAATTGTAAAGAATTTGATGAAGAAACAGTAATACCANCAATTGAAAA
TATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTAGTTGTTGAANATTTANTAAG
AGAAGTAGCAAAAAGAGGTATTCCATCAATGTTAATTAGNCCACCAATTATATTCTCACA
TGAAGAAACAGGTATTGGTCATGATTNTGATTTCTTCCAATTAATTATTCAATCATGTTA
TGCAGTTAAAAAGTATCCAAAAATTGATAAAAACATATTAACATCACCAATTGGTTGGAT
AAGTTTAAATACAATTAAAATGATCGGAAATGAAAAATGTTGGAATAAATCATCTTCANC
ATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCAGCAATGAACCCTTCATTNTCAT
TCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAACAATGGAAGAATATCATTA
ATCAATCAAAGATTCTATCATGTGTAAAATTAAAAACATTCCATTCATTAGATGATTTAT
ATAATATTTATAACTTGGGTAATGGATTTGGTGTTTCAAAGAAAACTAAAGAATTATTAC
AATCAA
Length of 3' end seq. 666
Connected seq. ID CHR327P
Connected seq. 
>CHR327P.Seq
AAAACATATTGGTAAAATTGTATTAGATCATAGTTGTTCAAATGGTAGTATCGGTAGTGA
TGGATTATTAAATCAACTCATTGAATCAGATAACAATGAAAAGAATCACACAATACTAAA
ATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTATTACAGGTCA
ATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCAACAGAATCATT
TGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAGAACTATTAATCAA
TAAAACAATATCAAGAAAGGATAATAACACTAAATTCCATTTCAAGAGTGTAGATGTTGG
TGATCCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAAATCCAAATATTGA
TAACATTGATTCAATATTCCATTATGCATTCGCTCAAATAACTAAAGAAGTAGAAGAAAT
CGATATTGAATCATTAGATATTTCACATAATGCTAAAACGATGGGTGCAATTAATTTACA
TGAAATTTCAATTGAGAAATCATGGAAATTAAAACAATTTGTTATGGCATCATCGATTGC
ATCATTATTTGGCTCAT----------GCTGGTGATNATCAANAACCNANTGTAGGATTT
AGCTCAGTATCAGTATTCTTTAATGCATCAAATTGTAAAGAATTTGATGAAGAAACAGTA
ATACCANCAATTGAAAATATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTAGTT
GTTGAANATTTANTAAGAGAAGTAGCAAAAAGAGGTATTCCATCAATGTTAATTAGNCCA
CCAATTATATTCTCACATGAAGAAACAGGTATTGGTCATGATTNTGATTTCTTCCAATTA
ATTATTCAATCATGTTATGCAGTTAAAAAGTATCCAAAAATTGATAAAAACATATTAACA
TCACCAATTGGTTGGATAAGTTTAAATACAATTAAAATGATCGGAAATGAAAAATGTTGG
AATAAATCATCTTCANCATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCAGCAAT
GAACCCTTCATTNTCATTCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAACA
ATGGAAGAATATCATTAATCAATCAAAGATTCTATCATGTGTAAAATTAAAAACATTCCA
TTCATTAGATGATTTATATAATATTTATAACTTGGGTAATGGATTTGGTGTTTCAAAGAA
AACTAAAGAATTATTACAATCAA
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -