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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR324
Library CH
(Link to library)
Clone ID CHR324
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHR324P
(Link to Original site)
Representative DNA sequence 
>CHR324 (CHR324Q) /CSM/CH/CHR3-A/CHR324Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGA
GAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCA
ATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGA
AAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---APERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQ
DAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQF
SNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAV
YLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKL
NQEKNQQLLEQEQNQK*
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---APERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQ
DAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQF
SNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAV
YLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKL
NQEKNQQLLEQEQNQK*

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---lqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnk
mplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnf
qikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmls
t*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*
ikkkinny*nknkiknn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---sreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*ik
srkkstiirtrtkskii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        771   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        771   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        771   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        771   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        771   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        771   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        771   0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/                        771   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        771   0.0
SHL145 (SHL145Q) /CSM/SH/SHL1-B/SHL145Q.Seq.d/                        771   0.0
own update 2004. 5.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   771   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-04  9
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   0.002  11
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.005  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.006  8
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.024  10
AL356122|AL356122.9 Human DNA sequence from clone RP11-61P22 on chromosome 6.    40   0.082  6
BH137529|BH137529.1 ENTPA17TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.14   3
AC098999|AC098999.8 Rattus norvegicus clone CH230-186P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.18   2
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   298   1e-79
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.37
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.49
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.64
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.83
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    37   1.1
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    36   1.4
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.8
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.8
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   2.4
protein update 2009. 4.12
PSORT 

 psg: 0.40  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHR324 is nuc
5' end seq. ID CHR324F
5' end seq. 
>CHR324F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHR324Z
3' end seq. 
>CHR324Z.Seq
NNNNNNNNNNGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGC
AGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAA
CTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACA
AGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGA
GTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAA
ATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATT
TTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACA
ACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAA
AGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGT
CTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAA
TAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAAT
TAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATT
AAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATT
Length of 3' end seq. 774
Connected seq. ID CHR324P
Connected seq. 
>CHR324P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-GCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGA
GAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCA
ATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGA
AAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATT
Length of connected seq. 875
Full length Seq ID -
Full length Seq. -
Length of full length seq. -