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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR323
Library CH
(Link to library)
Clone ID CHR323
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR323P
(Link to Original site)
Representative DNA sequence 
>CHR323 (CHR323Q) /CSM/CH/CHR3-A/CHR323Q.Seq.d/
ATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTT
TAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATT
CATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTAT
ATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCAT
TGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTG
ATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATG
ATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACT
TTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGG
TTTCAGCTGATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTC
CATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTG
TTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCT
ACTCAACCACCAACACCTXXXXXXXXXXGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGT
TGATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAA
TCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGA
TATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTA
TAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGG
TCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTA
TGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGG
TATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCA
ACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGT
TGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTC
CATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATC
AACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTT
AAGGTTGTTCATTGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iymyiffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhky
minvfwh*kenvixiqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlym
md*lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqxif*lqiplpitf
h*LNKLVFHQAHLYLQLELVLIWGYVEQTQPPTQPPTQPPTQPPTP---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGI
FQKNKK*kni
Translated Amino Acid sequence (All Frames) 
Frame A:
iymyiffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhky
minvfwh*kenvixiqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlym
md*lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqxif*lqiplpitf
h*LNKLVFHQAHLYLQLELVLIWGYVEQTQPPTQPPTQPPTQPPTP---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGI
FQKNKK*kni

Frame B:
ficifffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi
*styfgikrkmlfxfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*
winstynl*iyiyqskrlll*nl*kdiglstrctmyssngfs**fgsxsfsckylcl*hs
id*tswcfirliytys*n*c*fgvmlsklnhqlnhllnhllnhqh---

---vnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllqlv
sitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhn
ivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqii
iv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlgllf*gcslvy
skkiknkki*

Frame C:
lyvyfflfikkf*llyiiflniyiniy*yininkmkilyslllissiilntvlnissqvy
dqrilalkgkcylxsnknalydegepgfgnveislgnatdykgnkypiryssadgtfiyd
gltqrttyeftftnpkdyyfetyektlacppgvpcirptvsadnlaaxllvantfaynip
likqvgvssgssiltvrisvdlglc*ansttnsttysttysttnt---

---*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynwf
rll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffssti
scw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfkll
lcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*cwgyyfkvvhwyi
pkk*kikkyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR323 (CHR323Q) /CSM/CH/CHR3-A/CHR323Q.Seq.d/                       2420   0.0
SHL147 (SHL147Q) /CSM/SH/SHL1-B/SHL147Q.Seq.d/                       1417   0.0
SHK530 (SHK530Q) /CSM/SH/SHK5-B/SHK530Q.Seq.d/                       1417   0.0
SHG711 (SHG711Q) /CSM/SH/SHG7-A/SHG711Q.Seq.d/                       1417   0.0
SHG157 (SHG157Q) /CSM/SH/SHG1-C/SHG157Q.Seq.d/                       1417   0.0
SHA580 (SHA580Q) /CSM/SH/SHA5-D/SHA580Q.Seq.d/                       1417   0.0
SHA212 (SHA212Q) /CSM/SH/SHA2-A/SHA212Q.Seq.d/                       1417   0.0
CHQ566 (CHQ566Q) /CSM/CH/CHQ5-C/CHQ566Q.Seq.d/                       1417   0.0
CHI664 (CHI664Q) /CSM/CH/CHI6-C/CHI664Q.Seq.d/                       1417   0.0
AHK467 (AHK467Q) /CSM/AH/AHK4-C/AHK467Q.Seq.d/                       1417   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    62   3e-05  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    62   3e-05  1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds.    62   3e-05  1
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   4e-05  3
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    32   5e-04  3
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt].    58   5e-04  1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    58   5e-04  1
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    58   5e-04  1
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   0.002  3
DT775356|DT775356.1 124719991 TH1 Tribolium castaneum cDNA clone 3C7 3', mRNA sequence.    54   0.008  1
dna update 2005.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    78   9e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    66   3e-09
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    61   1e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05
protein update 2009. 4.12
PSORT 

 psg: 0.79  gvh: 0.51  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CHR323 is nuc
5' end seq. ID CHR323F
5' end seq. 
>CHR323F.Seq
ATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTT
TAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATT
CATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTAT
ATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCAT
TGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTG
ATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATG
ATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACT
TTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGG
TTTCAGCTGATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTC
CATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTG
TTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCT
ACTCAACCACCAACACCTNNNNNNNNNN
Length of 5' end seq. 688
3' end seq. ID CHR323Z
3' end seq. 
>CHR323Z.Seq
NNNNNNNNNNGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCAC
TGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCA
TGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGG
TTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAA
ACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAAC
CTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACA
ATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGA
ACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAG
TCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTA
TTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGC
TGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTA
TGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCATTGGTAT
ATTCCAAAAAAATAAAAAATAAAAAAATATAAA
Length of 3' end seq. 753
Connected seq. ID CHR323P
Connected seq. 
>CHR323P.Seq
ATTTATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTT
TAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATT
CATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTAT
ATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCAT
TGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTG
ATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATG
ATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACT
TTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGG
TTTCAGCTGATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTC
CATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTG
TTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCT
ACTCAACCACCAACACCT----------GGTAAATGTGGTAGTCTTGTTGGTGCCGGAGT
TGATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAA
TCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGA
TATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTA
TAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGG
TCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTA
TGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGG
TATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCA
ACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGT
TGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTC
CATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATC
AACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTT
AAGGTTGTTCATTGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAA
Length of connected seq. 1421
Full length Seq ID -
Full length Seq. -
Length of full length seq. -