CHR319 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR319
Library	CH (Link to library)
Clone ID	CHR319 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15817-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR3-A/CHR319Q.Seq.d/
Representative seq. ID	CHR319P (Link to Original site)
Representative DNA sequence	>CHR319 (CHR319Q) /CSM/CH/CHR3-A/CHR319Q.Seq.d/ ATAGTTATTTAAATAAACGAAAAAAATAAAAAAATAGTTTAATAAATAAAAATAAACAAA ACAAATAAAAAAATAAATAAATAAAAAAAATGAAAACAGTTACATTAGCAACATGTAACT TAAATCAATGGGCAATGGATTTCAAAGGAAATCTTGAAAGAATAATAGAATCGATTAATA TTGCAAAATCTAAAGGAGCAAAATATAGATTAGGACCAGAATTAGAAATTTGTGGATATG GTTGTGAAGATCATTTTTTAGAACAAGATACAATGTTACATTGTTGGCAAAGTTTAGCAG TAATATTAAAGGATCCAGAGTTAACAAAGGATATTTTAGTTGATGTTGGTATGCCAGTAT TACATAAGGATGTTAGATATAATTGTAGAGTCATATTATTGAATCAAAAGATTTATTTAA TACAACCAAAGAAAGCCATGGCAATGGATGGTAATTATAGGGAAGGTCGTTGGTTTACAC CATGGATTAAACCAAGAGTTGTGGAAACTTTTTATCTTCCAAGGATCATTAGTCAAATCA CTGGTCAGGATGAATGCCAAATCGGTGATGCAATCATTTCAACACTTGACACAGCCATTT CGTCAGAGACATGTGAGGAGTTATTTACACCAAATTCACCACATATTCAAATGGGTTTAX XXXXXXXXXCACTATTACTTTGGGAACAAGGTCGTCCAGGTTCTNTATTGGTTTTGGGTT CTGCAAATTGTGACGAATCATTACGTGGTTATATGACAAAATATGATTGTTCATCCGCTG ATATCAATCCAATTGGTGGTATGTCAAAAATTGATTTACGTTCATTCATTGAGTGGGNTG GTAAATTCAGAGATATGAAATCAATTNTNTNTGTACTCACAGCAACACCAACCGCTGAAT TAGAACCAATCNCTGAAAACTATACACAATCCGATGAAATTGATATGGGTATGACCTATG AAGAATTATCAATATTTGGTAAATTAANAAAAGTCAATCGTTGTGGTCCAGTTTCAATGT TTGAACGTTTGGTTGCAGATTGGGCACATTTAGAACCATCAGTTGTGGCTGAAAAAGTTA AACGTTTCTTTTATTATTATGCAATCAATCGTCATAAATTAACAACTTTAACACCATCCT ATCATGCTGAAGGTTATTCTCCTGATGATAATCGTTATGATCATCGTCAATTCCTTTACA ATTCAAAATGGGATGTTCAATTTGAAACTATTGATAAAATTGTATTAAGATTATNTCAAA GACCNCAATTAAAAAATACTGTAAACNGTCCAAATCAAGCATCATTAACTCAACAATAAA ATAACAAAATAAAAAAAAAAAAATNATT
sequence update	2002.10.25
Translated Amino Acid sequence	sylnkrkkknslinknkqnkknkIKKMKTVTLATCNLNQWAMDFKGNLERIIESINI AKSKGAKYRLGPELEICGYGCEDHFLEQDTMLHCWQSLAVILKDPELTKDILVDVGMPVL HKDVRYNCRVILLNQKIYLIQPKKAMAMDGNYREGRWFTPWIKPRVVETFYLPRIISQIT GQDECQIGDAIISTLDTAISSETCEELFTPNSPHIQMGL--- ---LLLWEQGRPGSXLVLGSANCDESLRGYMTKYDCSSADINPIGGMSKIDLRSFIEWXG KFRDMKSIXXVLTATPTAELEPIXENYTQSDEIDMGMTYEELSIFGKLXKVNRCGPVSMF ERLVADWAHLEPSVVAEKVKRFFYYYAINRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYN SKWDVQFETIDKIVLRLXQRPQLKNTVNXPNQASLTQQnnkikkkkx
Translated Amino Acid sequence (All Frames)	Frame A: iviineknkkivikinktnkkinkkkkqlhqhvtingqwiskeilkenrli lqnlkeqniddqnkfvdmvvkiifnkiqcyivgkvqyriqsqriflmlvcqy yirmldiivesyyikrfiynqrkpwqwmviigkvvglhhglnqelwklfifqgslvks lvrmnaksvmqsfqhltqpfrqrhvrsylhqihhifkwv--- ---hyyfgnkvvqvlywfwvlqivtnhyvviqnmivhplisiqlvvcqkliyvhslsgx vnseinqxxxysqqhqplnnqslktihnpmkliwvpmknyqylvnxksivvvqfqc lnvwlqighinhqlwlkklnvsfiimqsivinqlhhpimlkvillmiivmiivnsft iqngmfnlklliklydyxkdxnkiltvqikhhlnnkitkkkknx Frame B: lfktkkikkfnkktkqikkinkknensyisnmlksmgngfqrksknnridy ckirskiirtrirnlwiwlrsffrtrynvtllakfssnikgsrvnkgyfscwyasi tgcilshiieskdlfnttkeshgngwlgrslvytmdtkscgnflsskdhsnh wsgmpnrcnhfnthshfvrdmgviytkfttysngf--- ---titlgtrssrfxigfgfcklriitwlydkilfiryqsnwwyvknftfihvgw iqryeinxxcthsntnrirtnxklytirnygydlriiniwixksqslwssfnv tfgcrlgtfrtiscgkstfllllcnqssinnfntilscrlfs**slsssiplq fkmgcsinyncikixsktxikkyckxskssiinstikqnkkkkxi Frame C: sylnkrkkknslinknkqnkknkIKKMKTVTLATCNLNQWAMDFKGNLERIIESINI AKSKGAKYRLGPELEICGYGCEDHFLEQDTMLHCWQSLAVILKDPELTKDILVDVGMPVL HKDVRYNCRVILLNQKIYLIQPKKAMAMDGNYREGRWFTPWIKPRVVETFYLPRIISQIT GQDECQIGDAIISTLDTAISSETCEELFTPNSPHIQMGL--- ---LLLWEQGRPGSXLVLGSANCDESLRGYMTKYDCSSADINPIGGMSKIDLRSFIEWXG KFRDMKSIXXVLTATPTAELEPIXENYTQSDEIDMGMTYEELSIFGKLXKVNRCGPVSMF ERLVADWAHLEPSVVAEKVKRFFYYYAINRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYN SKWDVQFETIDKIVLRLXQRPQLKNTVNXPNQASLTQQnnkikkkkx
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHR319 (CHR319Q) /CSM/CH/CHR3-A/CHR319Q.Seq.d/ 2327 0.0 VHC625 (VHC625Q) /CSM/VH/VHC6-B/VHC625Q.Seq.d/ 1239 0.0 VHA707 (VHA707Q) /CSM/VH/VHA7-A/VHA707Q.Seq.d/ 1239 0.0 CHS208 (CHS208Q) /CSM/CH/CHS2-A/CHS208Q.Seq.d/ 1239 0.0 CHR356 (CHR356Q) /CSM/CH/CHR3-C/CHR356Q.Seq.d/ 1239 0.0 CHQ803 (CHQ803Q) /CSM/CH/CHQ8-A/CHQ803Q.Seq.d/ 1239 0.0 CHQ189 (CHQ189Q) /CSM/CH/CHQ1-D/CHQ189Q.Seq.d/ 1239 0.0 CHP772 (CHP772Q) /CSM/CH/CHP7-C/CHP772Q.Seq.d/ 1239 0.0 CHI337 (CHI337Q) /CSM/CH/CHI3-B/CHI337Q.Seq.d/ 1239 0.0 CHG620 (CHG620Q) /CSM/CH/CHG6-A/CHG620Q.Seq.d/ 1239 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AX489232\|AX489232.1 Sequence 6532 from Patent WO02053728. 92 3e-21 4 AR545706\|AR545706.1 Sequence 837 from patent US 6747137. 92 3e-21 4 BZ294214\|BZ294214.1 CG0770.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0770, DNA sequence. 52 5e-11 3 CR382133\|CR382133.1 Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii. 52 2e-10 3 U10556\|U10556.1 Saccharomyces cerevisiae chromosome VIII cosmid 9205. 52 2e-10 5 AL392865\|AL392865.1 T7 end of clone AR0AA007D04 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 54 1e-08 2 AL023704\|AL023704.2 S.pombe chromosome III cosmid c553. 38 2e-07 5 BP128471\|BP128471.1 Nicotiana tabacum cDNA, clone: BY223, primer: M13 forward, sequence 1. 56 8e-07 2 AB126258\|AB126258.1 Nicotiana tabacum mRNA for NAD synthetase, partial cds. 56 1e-06 2 CR380956\|CR380956.1 Candida glabrata strain CBS138 chromosome J complete sequence. 52 1e-06 2
dna update	2005.11.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AK001493_1(AK001493\|pid:none) Homo sapiens cDNA FLJ10631 fis, cl... 262 2e-68 BC161121_1(BC161121\|pid:none) Xenopus tropicalis hypothetical pr... 261 5e-68 (Q6IA69) RecName: Full=Glutamine-dependent NAD(+) synthetase; ... 261 5e-68 AB091316_1(AB091316\|pid:none) Homo sapiens mRNA for glutamine-de... 260 7e-68 (Q5ZMA6) RecName: Full=Glutamine-dependent NAD(+) synthetase; ... 260 7e-68 (Q3ZBF0) RecName: Full=Glutamine-dependent NAD(+) synthetase; ... 260 9e-68 BC038016_1(BC038016\|pid:none) Mus musculus NAD synthetase 1, mRN... 252 2e-65 AE016820_727(AE016820\|pid:none) Ashbya gossypii (= Eremothecium ... 251 5e-65 AP008213_307(AP008213\|pid:none) Oryza sativa (japonica cultivar-... 251 5e-65 CR380956_461(CR380956\|pid:none) Candida glabrata strain CBS138 c... 250 7e-65
protein update	2009. 4.12
PSORT	psg: 0.85 gvh: 0.30 alm: 0.48 top: 0.20 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 36.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: endoplasmic reticulum >> prediction for CHR319 is nuc
5' end seq. ID	CHR319F
5' end seq.	>CHR319F.Seq ATAGTTATTTAAATAAACGAAAAAAATAAAAAAATAGTTTAATAAATAAAAATAAACAAA ACAAATAAAAAAATAAATAAATAAAAAAAATGAAAACAGTTACATTAGCAACATGTAACT TAAATCAATGGGCAATGGATTTCAAAGGAAATCTTGAAAGAATAATAGAATCGATTAATA TTGCAAAATCTAAAGGAGCAAAATATAGATTAGGACCAGAATTAGAAATTTGTGGATATG GTTGTGAAGATCATTTTTTAGAACAAGATACAATGTTACATTGTTGGCAAAGTTTAGCAG TAATATTAAAGGATCCAGAGTTAACAAAGGATATTTTAGTTGATGTTGGTATGCCAGTAT TACATAAGGATGTTAGATATAATTGTAGAGTCATATTATTGAATCAAAAGATTTATTTAA TACAACCAAAGAAAGCCATGGCAATGGATGGTAATTATAGGGAAGGTCGTTGGTTTACAC CATGGATTAAACCAAGAGTTGTGGAAACTTTTTATCTTCCAAGGATCATTAGTCAAATCA CTGGTCAGGATGAATGCCAAATCGGTGATGCAATCATTTCAACACTTGACACAGCCATTT CGTCAGAGACATGTGAGGAGTTATTTACACCAAATTCACCACATATTCAAATGGGTTTAN NNNNNNNNN
Length of 5' end seq.	669
3' end seq. ID	CHR319Z
3' end seq.	>CHR319Z.Seq NNNNNNNNNNCACTATTACTTTGGGAACAAGGTCGTCCAGGTTCTNTATTGGTTTTGGGT TCTGCAAATTGTGACGAATCATTACGTGGTTATATGACAAAATATGATTGTTCATCCGCT GATATCAATCCAATTGGTGGTATGTCAAAAATTGATTTACGTTCATTCATTGAGTGGGNT GGTAAATTCAGAGATATGAAATCAATTNTNTNTGTACTCACAGCAACACCAACCGCTGAA TTAGAACCAATCNCTGAAAACTATACACAATCCGATGAAATTGATATGGGTATGACCTAT GAAGAATTATCAATATTTGGTAAATTAANAAAAGTCAATCGTTGTGGTCCAGTTTCAATG TTTGAACGTTTGGTTGCAGATTGGGCACATTTAGAACCATCAGTTGTGGCTGAAAAAGTT AAACGTTTCTTTTATTATTATGCAATCAATCGTCATAAATTAACAACTTTAACACCATCC TATCATGCTGAAGGTTATTCTCCTGATGATAATCGTTATGATCATCGTCAATTCCTTTAC AATTCAAAATGGGATGTTCAATTTGAAACTATTGATAAAATTGTATTAAGATTATNTCAA AGACCNCAATTAAAAAATACTGTAAACNGTCCAAATCAAGCATCATTAACTCAACAATAA AATAACAAAATAAAAAAAAAAAAATNATT
Length of 3' end seq.	689
Connected seq. ID	CHR319P
Connected seq.	>CHR319P.Seq ATAGTTATTTAAATAAACGAAAAAAATAAAAAAATAGTTTAATAAATAAAAATAAACAAA ACAAATAAAAAAATAAATAAATAAAAAAAATGAAAACAGTTACATTAGCAACATGTAACT TAAATCAATGGGCAATGGATTTCAAAGGAAATCTTGAAAGAATAATAGAATCGATTAATA TTGCAAAATCTAAAGGAGCAAAATATAGATTAGGACCAGAATTAGAAATTTGTGGATATG GTTGTGAAGATCATTTTTTAGAACAAGATACAATGTTACATTGTTGGCAAAGTTTAGCAG TAATATTAAAGGATCCAGAGTTAACAAAGGATATTTTAGTTGATGTTGGTATGCCAGTAT TACATAAGGATGTTAGATATAATTGTAGAGTCATATTATTGAATCAAAAGATTTATTTAA TACAACCAAAGAAAGCCATGGCAATGGATGGTAATTATAGGGAAGGTCGTTGGTTTACAC CATGGATTAAACCAAGAGTTGTGGAAACTTTTTATCTTCCAAGGATCATTAGTCAAATCA CTGGTCAGGATGAATGCCAAATCGGTGATGCAATCATTTCAACACTTGACACAGCCATTT CGTCAGAGACATGTGAGGAGTTATTTACACCAAATTCACCACATATTCAAATGGGTTTA- ---------CACTATTACTTTGGGAACAAGGTCGTCCAGGTTCTNTATTGGTTTTGGGTT CTGCAAATTGTGACGAATCATTACGTGGTTATATGACAAAATATGATTGTTCATCCGCTG ATATCAATCCAATTGGTGGTATGTCAAAAATTGATTTACGTTCATTCATTGAGTGGGNTG GTAAATTCAGAGATATGAAATCAATTNTNTNTGTACTCACAGCAACACCAACCGCTGAAT TAGAACCAATCNCTGAAAACTATACACAATCCGATGAAATTGATATGGGTATGACCTATG AAGAATTATCAATATTTGGTAAATTAANAAAAGTCAATCGTTGTGGTCCAGTTTCAATGT TTGAACGTTTGGTTGCAGATTGGGCACATTTAGAACCATCAGTTGTGGCTGAAAAAGTTA AACGTTTCTTTTATTATTATGCAATCAATCGTCATAAATTAACAACTTTAACACCATCCT ATCATGCTGAAGGTTATTCTCCTGATGATAATCGTTATGATCATCGTCAATTCCTTTACA ATTCAAAATGGGATGTTCAATTTGAAACTATTGATAAAATTGTATTAAGATTATNTCAAA GACCNCAATTAAAAAATACTGTAAACNGTCCAAATCAAGCATCATTAACTCAACAATAAA ATAACAAAATAAAAAAAAAAAAATNATT
Length of connected seq.	1338
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas