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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR316
Library CH
(Link to library)
Clone ID CHR316
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR316P
(Link to Original site)
Representative DNA sequence 
>CHR316 (CHR316Q) /CSM/CH/CHR3-A/CHR316Q.Seq.d/
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAXXXXXXXXXXTNTAA
TCGATGGTAANCCATGTACACAACCTGAAATCAACATTCACCACTTATTCTAGTTTAACC
TGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAAT
ATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAA
TCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGT
ATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAA
AAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTT
AAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGC
GCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCA
CTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCA
ATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCA
ATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAA
TTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCA
AATAATTACTCAATTATTTTTTAAATTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVE---

---XIDGXPCTQPEINIHHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfp
i*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is*
*sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntis
kfksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink
*kksk*llnyflnf
Translated Amino Acid sequence (All Frames) 
Frame A:
idpqlviske*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklkliqmiplk---

---xnrw*xmytt*nqhsplilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfs
nlnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldql
iiyvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyf
qiqiq*ypiln*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*
ikkkqiitqlffkf

Frame B:
ltrn**lvkneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsfk
sk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fhi
*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnwr
ytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*---

---XIDGXPCTQPEINIHHLF*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfp
i*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is*
*sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntis
kfksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink
*kksk*llnyflnf

Frame C:
*paisn**RMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILLN
PNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTY
NYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGD
IPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVE---

---*smvxhvhnlkstfttyssltcnvtnydemlkynysntkfnisisvdgqyfiaqifq
fkyestisysenkssgfpnemyigivaiiiflaliffaiktqvekyieerrarkafrsvd
nlrlklrekhaaeiakhysfgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfp
nsnpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*in
kkkannysiif*il
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR316 (CHR316Q) /CSM/CH/CHR3-A/CHR316Q.Seq.d/                       2385   0.0
SHJ822 (SHJ822Q) /CSM/SH/SHJ8-A/SHJ822Q.Seq.d/                       1304   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1302   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1302   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1302   0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/                       1302   0.0
SHG659 (SHG659Q) /CSM/SH/SHG6-C/SHG659Q.Seq.d/                       1302   0.0
SHD567 (SHD567Q) /CSM/SH/SHD5-C/SHD567Q.Seq.d/                       1302   0.0
SHB116 (SHB116Q) /CSM/SH/SHB1-A/SHB116Q.Seq.d/                       1302   0.0
SHA870 (SHA870Q) /CSM/SH/SHA8-C/SHA870Q.Seq.d/                       1302   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   204   2e-83  14
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   0.002  18
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.003  15
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    36   0.014  13
AX345887|AX345887.1 Sequence 958 from Patent WO0200928.            34   0.051  6
AC114778|AC114778.5 Homo sapiens chromosome 2 clone RP11-516O5, complete sequence.    34   0.066  8
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.096  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.096  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.097  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.097  2
dna update 2005.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   394   e-108
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   245   6e-71
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   245   6e-71
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   245   1e-70
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   245   1e-70
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   244   2e-70
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   243   3e-70
protein update 2009. 4.12
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.31  top: 0.23  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR316 is end
5' end seq. ID CHR316F
5' end seq. 
>CHR316F.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAANNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID CHR316Z
3' end seq. 
>CHR316Z.Seq
NNNNNNNNNNTNTAATCGATGGTAANCCATGTACACAACCTGAAATCAACATTCACCACT
TATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCC
AATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTC
CAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAAT
GAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATT
AAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTT
GATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCA
TTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAA
TTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTT
CCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCT
ATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTC
AATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATA
AATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
Length of 3' end seq. 765
Connected seq. ID CHR316P
Connected seq. 
>CHR316P.Seq
ATTGACCCGCAATTAGTAATTAGTAAAGAATGAAATTAAAACATTTAACTATTTTTTTAT
TTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAA
GGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAA
ATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTG
ATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTT
TACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACAT
ATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAA
TTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTG
GAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAG
ATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACC
TTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAA----------TNTAA
TCGATGGTAANCCATGTACACAACCTGAAATCAACATTCACCACTTATTCTAGTTTAACC
TGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAAT
ATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAA
TCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGT
ATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAA
AAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTT
AAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGC
GCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCA
CTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCA
ATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCA
ATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAA
TTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCA
AATAATTACTCAATTATTTTTTAAATTTTA
Length of connected seq. 1400
Full length Seq ID -
Full length Seq. -
Length of full length seq. -