>CHR314 (CHR314Q) /CSM/CH/CHR3-A/CHR314Q.Seq.d/
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGNGGTGGTTCATCAXXXXX
XXXXXAGTTTGTTTNTTTANGATGTCCGCCCAAATTCATGAATGTAGATTTAATGACCCA
AGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATTAAGATGTCCACATGG
CCCATGAATGTAAAGTTGATCNCAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCAC
CACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATC
ATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTA
GAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGAC
CACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAG
TTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTT
TGAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTA
AAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATC
AACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGAT
GTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTA
GAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCA
TGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAG

fnfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEXXCH
KSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYXNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAXIKXCALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTSGGGSS--
-

---FVXLXCPPKFMNVDLMTQGHQCCVKVHHDRCSLRCPHGP*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfemstkt*m*sqplw*rmlc
*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*k*lfnl*rpkl*kkrftlchenctn**rkll*k

Frame A:
iqfyf*siqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**xxms
*ifgmycyklytmlw*tkmgll*ryi*ylyi*k*llxkfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cqx*xmclir*im*fpkxllfksnfllpr*inl*rfklw*fniwxwfi--
-

---slfxxdvrpns*m*i**pkvinav*rftmidvh*dvhmaheckvdxngkeccvrshr
ppppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrse
rphppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeecc
vkvhhdkcslrcppgheckvdqhgkeccvvahrpppkcslrcppkhecrinhfgeeccvk
srndcltcedlncerkglhcamktvpidkenccek

Frame B:
fnfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEXXCH
KSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYXNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAXIKXCALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTSGGGSS--
-

---vcxfxmsaqihecrfndprssmlckgsp**mfikmstwpmnvklixmvknvasdpid
hhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqk
dhthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvv
lkfttinvh*dvhqamnvklinmeknvallpidhhqnah*dvhqnmnvesitlvknavlk
vemiv*lvkt*tvkekvyivp*klyqlikkivvkk

Frame C:
silflinsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmxxnvi
nlrnvll*iihhvvvnknglalkvhlilvhmkivvixihpitkllkyqinasilmdllkl
qlqpsilvlmpxlxnvpy*vnhvvskxtlvqiqlpvaqvnqfvkv*alvvqhlxvvh---

---FVXLXCPPKFMNVDLMTQGHQCCVKVHHDRCSLRCPHGP*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfemstkt*m*sqplw*rmlc
*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*k*lfnl*rpkl*kkrftlchenctn**rkll*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR314 (CHR314Q) /CSM/CH/CHR3-A/CHR314Q.Seq.d/                       2391   0.0
SFI482 (SFI482Q) /CSM/SF/SFI4-D/SFI482Q.Seq.d/                       1542   0.0
CHI212 (CHI212Q) /CSM/CH/CHI2-A/CHI212Q.Seq.d/                       1532   0.0
SFB458 (SFB458Q) /CSM/SF/SFB4-C/SFB458Q.Seq.d/                       1526   0.0
CHR601 (CHR601Q) /CSM/CH/CHR6-A/CHR601Q.Seq.d/                       1526   0.0
CHR421 (CHR421Q) /CSM/CH/CHR4-A/CHR421Q.Seq.d/                       1526   0.0
CHL801 (CHL801Q) /CSM/CH/CHL8-A/CHL801Q.Seq.d/                       1526   0.0
CHL174 (CHL174Q) /CSM/CH/CHL1-D/CHL174Q.Seq.d/                       1526   0.0
AHK724 (AHK724Q) /CSM/AH/AHK7-A/AHK724Q.Seq.d/                       1526   0.0
AHD664 (AHD664Q) /CSM/AH/AHD6-C/AHD664Q.Seq.d/                       1526   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1376   0.0    3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1376   0.0    3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   1e-14  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   3e-14  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    66   2e-06  1
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   0.047  3
AC162511|AC162511.3 Bos taurus clone CH240-113F1, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    46   0.40   5
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.49   1
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.49   1
AC162809|AC162809.3 Bos taurus clone CH240-127K21, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    46   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   553   e-167
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   189   2e-46
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   110   1e-22
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    92   3e-17
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    82   4e-14
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    72   6e-11
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    72   6e-11
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        71   1e-10
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    67   1e-09
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    65   7e-09

 psg: 1.02  gvh: 0.68  alm: 0.49  top: 0.33  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHR314 is exc

>CHR314F.Seq
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGNGGTGGTTCATCANNNNN
NNNNN

>CHR314Z.Seq
NNNNNNNNNNAGTTTGTTTNTTTANGATGTCCGCCCAAATTCATGAATGTAGATTTAATG
ACCCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATTAAGATGTCCA
CATGGCCCATGAATGTAAAGTTGATCNCAATGGTAAAGAATGTTGCGTCAGATCCCATAG
ACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGA
TGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTG
TGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGA
AAGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATG
TAAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATG
CTCTTTGAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTG
TGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGT
TGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATT
AAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAA
AAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTG
TGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAG

>CHR314P.Seq
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAANAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGNGGTGGTTCATCA-----
-----AGTTTGTTTNTTTANGATGTCCGCCCAAATTCATGAATGTAGATTTAATGACCCA
AGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCATTAAGATGTCCACATGG
CCCATGAATGTAAAGTTGATCNCAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCAC
CACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATC
ATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTA
GAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGAC
CACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAG
TTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTT
TGAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTA
AAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATC
AACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGAT
GTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTA
GAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCA
TGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAG