>CHR293 (CHR293Q) /CSM/CH/CHR2-D/CHR293Q.Seq.d/
XXXXXXXXXXAGGTCATTTGGATAACATTTCCAACAANATGTTAATTGGGGNTATCAACT
NTGAAAACGGTAAANCCAACGCTGTTTTCAATCAATTCNCTGGNGAAATCGGTCCAGTNC
CAACCGTNGGTTGTGAATACAAAAAANGTGGNGTCAANTGGATNGTNGTTGGNGANGAAA
ANTANGGNGAAGGTTNATTTTGTGAACANGNTGCCCTNGAACCACGTNATTTCGGTGGNA
AANCTATCCTCGNTAAATCATTTGGTTGNATCCNCGAAACCNATTTCAANAAACAAGGNA
TTTTACCNTTAACCTTTGNTAACCCATTTGANTACGATAAAATNTTTGGNGACGATTGTA
TTTCAATCATTGGTTTCAAANATNTTGCCCCAGGTAAACAANTCACTTTCATTGTTAAAT
TTGNTAAACAAGGTTTTGAATTTGAAATTAAA

---GHLDNISNXMLIGXINXENGKXNAVFNQFXGEIGPVPTVGCEYKKXGVXWXVVGXEX
XGEGXFCEXXALEPRXFGGKXILXKSFGXIXETXFXKQGILPLTFXNPFXYDKXFGDDCI
SIIGFKXXAPGKQXTFIVKFXKQGFEFEIK

Frame A:
---GHLDNISNXMLIGXINXENGKXNAVFNQFXGEIGPVPTVGCEYKKXGVXWXVVGXEX
XGEGXFCEXXALEPRXFGGKXILXKSFGXIXETXFXKQGILPLTFXNPFXYDKXFGDDCI
SIIGFKXXAPGKQXTFIVKFXKQGFEFEIK


Frame B:
---viwitfptxc*lgxstxktvxptlfsinslxksvqxqpxvvntkxvxsxgxxlxxkx
xxkvxfvnxxpxnhvisvxxlssxnhlvxsxkpisxnkxfyx*plxthlxtikxlxtivf
qslvsxxlpqvnxslsllnlxnkvlnlkl


Frame C:
---sfg*hfqqxvnwgyql*kr*xqrcfqsixwxnrssxnrxl*iqkxwxqxdxxwxxkx
xxrxil*txcpxttxfrwxxypr*iiwlxprnxfqxtrxftxnlx*pi*xr*nxwxrlyf
nhwfqxxcpr*txhfhc*ix*trf*i*n*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR293 (CHR293Q) /CSM/CH/CHR2-D/CHR293Q.Seq.d/                        638   0.0
VHA855 (VHA855Q) /CSM/VH/VHA8-C/VHA855Q.Seq.d/                        615   e-175
VHK655 (VHK655Q) /CSM/VH/VHK6-C/VHK655Q.Seq.d/                        609   e-173
VHK566 (VHK566Q) /CSM/VH/VHK5-C/VHK566Q.Seq.d/                        609   e-173
CHH191 (CHH191Q) /CSM/CH/CHH1-D/CHH191Q.Seq.d/                        599   e-170
VHK586 (VHK586Q) /CSM/VH/VHK5-D/VHK586Q.Seq.d/                        597   e-170
VHI739 (VHI739Q) /CSM/VH/VHI7-B/VHI739Q.Seq.d/                        597   e-170
VHC132 (VHC132Q) /CSM/VH/VHC1-B/VHC132Q.Seq.d/                        597   e-170
VHP760 (VHP760Q) /CSM/VH/VHP7-C/VHP760Q.Seq.d/                        591   e-168
VHM853 (VHM853Q) /CSM/VH/VHM8-C/VHM853Q.Seq.d/                        591   e-168

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y16747|Y16747.1 Piromyces sp. E2 mRNA for aconitate hydratase.     54   0.003  1
DV396246|DV396246.1 NADDZ32TR Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADDZ32, mRNA sequence.    48   0.16   1
DV362177|DV362177.1 NACAI42TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NACAI42, mRNA sequence.    48   0.16   1
DV362149|DV362149.1 NACAI42TR Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NACAI42, mRNA sequence.    48   0.16   1
DV306367|DV306367.1 NABMX90TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABMX90, mRNA sequence.    48   0.16   1
DV329097|DV329097.1 NABTE46TF Aedes aegypti infected with Plasmodium gallinaceum Aedes aegypti cDNA clone NABTE46, mRNA sequence.    48   0.16   1
BW498115|BW498115.1 Ciona intestinalis cDNA, clone:cima008p06, 3'end, single read.    46   0.62   1
BW494859|BW494859.1 Ciona intestinalis cDNA, clone:cima010i17, 3'end, single read.    46   0.62   1
BW494781|BW494781.1 Ciona intestinalis cDNA, clone:cima010e13, 3'end, single read.    46   0.62   1
BW493573|BW493573.1 Ciona intestinalis cDNA, clone:cima037a03, 3'end, single read.    46   0.62   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49931_1(Z49931|pid:none) B.taurus mRNA for mitochondrial aconit...   141   8e-33
DQ468384_1(DQ468384|pid:none) Bos taurus BTA05 5597 genomic sequ...   141   8e-33
BC102642_1(BC102642|pid:none) Bos taurus aconitase 2, mitochondr...   141   8e-33
(P20004) RecName: Full=Aconitate hydratase, mitochondrial;      ...   141   8e-33
AF428141_1(AF428141|pid:none) Gallus gallus aconitase precursor ...   140   1e-32
BC058049_1(BC058049|pid:none) Danio rerio aconitase 2, mitochond...   139   3e-32
(Q99KI0) RecName: Full=Aconitate hydratase, mitochondrial;      ...   138   5e-32
AB105050_1(AB105050|pid:none) Antheraea yamamai mRNA for hypothe...   138   5e-32
AK144207_1(AK144207|pid:none) Mus musculus kidney CCL-142 RAG cD...   138   5e-32
AK297213_1(AK297213|pid:none) Homo sapiens cDNA FLJ52327 complet...   137   1e-31

 psg: 0.75  gvh: 0.46  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHR293 is cyt

>CHR293Z.Seq
NNNNNNNNNNAGGTCATTTGGATAACATTTCCAACAANATGTTAATTGGGGNTATCAACT
NTGAAAACGGTAAANCCAACGCTGTTTTCAATCAATTCNCTGGNGAAATCGGTCCAGTNC
CAACCGTNGGTTGTGAATACAAAAAANGTGGNGTCAANTGGATNGTNGTTGGNGANGAAA
ANTANGGNGAAGGTTNATTTTGTGAACANGNTGCCCTNGAACCACGTNATTTCGGTGGNA
AANCTATCCTCGNTAAATCATTTGGTTGNATCCNCGAAACCNATTTCAANAAACAAGGNA
TTTTACCNTTAACCTTTGNTAACCCATTTGANTACGATAAAATNTTTGGNGACGATTGTA
TTTCAATCATTGGTTTCAAANATNTTGCCCCAGGTAAACAANTCACTTTCATTGTTAAAT
TTGNTAAACAAGGTTTTGAATTTGAAATTAAA