CHR286
Library CH
(Link to library)
Clone ID CHR286
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11151-1
Original site URL
Representative seq. ID CHR286P
(Link to Original site)
Representative DNA sequence
>CHR286 (CHR286Q) /CSM/CH/CHR2-D/CHR286Q.Seq.d/
AGAGATTATAGATTGGATTACCAAATGTATGCCAATTAAAAGAGAAGAAGCATCCATTTT
AGTTTTGGATATGTTGATGAAACAATTCTTTATTCAAATTTCAGATGATGGTATACCCAT
TTCAAATCAAAAAGGTACCAATCCAACCTTTTCAGATTCACCAACCTCATTCTATATGTT
TTTAGAGGACGATCCAGAATTGATTGCTCGTCAATACACTTTCCTTGAATTGAAATATCT
TCAAAATATTCATCCAAGAGAATTGTTGGGTTTCTCTGTTGGTTTGGTAATGCCAAATGA
AAATGAAAAGGATCCTGAGAAATGGAGACAATCAAATTTCCCACATATCTATGATTATTT
TAGATGGTTCAATAAGATGACAATGTTAGTTAGTACAGAAATTTTAAGACAAAGAGATAT
TAAACAACGTGCTTCAATCATTGAAAAGTATATCTCTATCGCATTGGAGTATCTTAGTCT
TTGGAATTTCAATGGTATCATGCAAGTATTAAGTTCACTCCATAGTGAACCAATTTCAAG
ACTCTCTGCAACTTGGGCAAAAGTTTCTCAGAGATCAATGGATTGTTTCTATGAACTCTC
ACGTCTTATGTTACCCGAATCCAXXXXXXXXXXCATGTTCATTAAACCGTTCCGGTAGAT
TGTATATCTCTCAACAACATGTTTGTTTCTACAGTAAATTCTTTGGTTATAAAACTAAAA
AGGTAATTCCATTCAAAAATATTGACAAACTAATTTGTATCAATGTCAATCAAATAGAAC
TCACTCGTCTTAAAAACACCGTACCAAGTAATTATCGTTTAACTTTCCAAACTGGCAAAG
ATCGTGAAGATGCTTTCAGTATGATTCATATCCTTTGGGATTCATCAAAAGTCTCCAATT
CCTCCTCTGATGAAGTCAAAAATAAATTGGCTGCCGAAAGAAAGAAAGTCAATAATCTTA
CACTCAAAACTCGTTCCAATAAAAACAAAGGCGATGAACTCACCAAAGAGGATTGGGAAT
TAATCGGTTGTGAAGGTTCACGTTCCTCCACTTTCAAAAAGGATGAAGTAATCATTCGTG
AAGGTGAACGTATGCAAAAGATTTTCCAAATTGGTAAAGGTGTTTGTCGTATTGAAAAAT
CAGTACCTGTTGCTCCTGGCTCTTCTGAAATGAAAAAAGTTGTACTTGGAACAATGAAAC
AAGATGATACCTTTGGTGAAATCACTTACCTCTTAAATGGTGAAACCACTGCTGATGTCA
TTGCTGACACTGATCAAACCGAGGTTTATACAATCGAAGGTCAATTTGTAAATATTTTAT
TCGATTTAAATCCTGCTTTAGCTTCAAGATGGTTTAAATATTTAGCCACTGCTTTAAACA
AAACTTTAATNAAAGAGAATCACA
sequence update 2002.10.25
Translated Amino Acid sequence
EIIDWITKCMPIKREEASILVLDMLMKQFFIQISDDGIPISNQKGTNPTFSDSPTSFYMF
LEDDPELIARQYTFLELKYLQNIHPRELLGFSVGLVMPNENEKDPEKWRQSNFPHIYDYF
RWFNKMTMLVSTEILRQRDIKQRASIIEKYISIALEYLSLWNFNGIMQVLSSLHSEPISR
LSATWAKVSQRSMDCFYELSRLMLPES---

---CSLNRSGRLYISQQHVCFYSKFFGYKTKKVIPFKNIDKLICINVNQIELTRLKNTVP
SNYRLTFQTGKDREDAFSMIHILWDSSKVSNSSSDEVKNKLAAERKKVNNLTLKTRSNKN
KGDELTKEDWELIGCEGSRSSTFKKDEVIIREGERMQKIFQIGKGVCRIEKSVPVAPGSS
EMKKVVLGTMKQDDTFGEITYLLNGETTADVIADTDQTEVYTIEGQFVNILFDLNPALAS
RWFKYLATALNKTLXKENH


Translated Amino Acid sequence (All Frames)
Frame A:
rdyrldyqmyan*krrsihfsfgyvdetilysnfr*wythfkskryqsnlfrftnlilyv
frgrsridcssihfp*ieisskysskrivgflcwfgnak*k*kgs*emetikfptyl*lf
*mvq*ddnvs*yrnfktkry*ttcfnh*kvylyrigvs*slefqwyhasikftp**tnfk
tlcnlgksfseinglfl*tltsyvtri---

---hvh*tvpvdcislnnmfvstvnslviklkr*fhskiltn*fvsmsik*nslvlktpy
qviiv*lsklakivkmlsv*fisfgihqkspipplmkskinwlpkerksiilhsklvpik
tkamnspkrign*svvkvhvpplskrmk*sfvkvnvckrfsklvkvfvvlknqyllllal
lk*kklyleq*nkmiplvkslts*mvkpllmslltlikprfiqskvnl*ifysi*ill*l
qdglni*pll*tkl*xkrit

Frame B:
EIIDWITKCMPIKREEASILVLDMLMKQFFIQISDDGIPISNQKGTNPTFSDSPTSFYMF
LEDDPELIARQYTFLELKYLQNIHPRELLGFSVGLVMPNENEKDPEKWRQSNFPHIYDYF
RWFNKMTMLVSTEILRQRDIKQRASIIEKYISIALEYLSLWNFNGIMQVLSSLHSEPISR
LSATWAKVSQRSMDCFYELSRLMLPES---

---mfikpfr*ivylsttclflq*ilwl*n*kgnsiqky*qtnlyqcqsnrthss*khrt
k*lsfnfpnwqrs*rcfqydsyplgfikslqfll**sqk*igcrkkesq*sytqnsfq*k
qrr*thqrglginrl*rftflhfqkg*snhs*r*tyakdfpnw*rclsy*kistccswlf
*neksctwnnetr*ylw*nhlplkw*nhc*chc*h*snrglynrrsickyfirfkscfsf
kmv*ifshcfkqnfnxres

Frame C:
rl*iglpnvcqlkekkhpf*fwic**nnslfkfqmmvypfqikkvpiqpfqihqphsicf
*rtiqn*llvntlsln*nifkifiqencwvsllvw*cqmkmkrilrngdnqishismiil
dgsir*qc*lvqkf*dkeilnnvlqslksislshwsilvfgismvscky*vhsivnqfqd
slqlgqkflrdqwivsmnshvlcypnp---

---CSLNRSGRLYISQQHVCFYSKFFGYKTKKVIPFKNIDKLICINVNQIELTRLKNTVP
SNYRLTFQTGKDREDAFSMIHILWDSSKVSNSSSDEVKNKLAAERKKVNNLTLKTRSNKN
KGDELTKEDWELIGCEGSRSSTFKKDEVIIREGERMQKIFQIGKGVCRIEKSVPVAPGSS
EMKKVVLGTMKQDDTFGEITYLLNGETTADVIADTDQTEVYTIEGQFVNILFDLNPALAS
RWFKYLATALNKTLXKENH

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR286 (CHR286Q) /CSM/CH/CHR2-D/CHR286Q.Seq.d/ 2718 0.0
SHL493 (SHL493Q) /CSM/SH/SHL4-D/SHL493Q.Seq.d/ 1469 0.0
AHF218 (AHF218Q) /CSM/AH/AHF2-A/AHF218Q.Seq.d/ 1469 0.0
AHO226 (AHO226Q) /CSM/AH/AHO2-B/AHO226Q.Seq.d/ 1467 0.0
AHB890 (AHB890Q) /CSM/AH/AHB8-D/AHB890Q.Seq.d/ 1449 0.0
VHA482 (VHA482Q) /CSM/VH/VHA4-D/VHA482Q.Seq.d/ 1439 0.0
AHO645 (AHO645Q) /CSM/AH/AHO6-B/AHO645Q.Seq.d/ 1423 0.0
VHP787 (VHP787Q) /CSM/VH/VHP7-D/VHP787Q.Seq.d/ 1392 0.0
VHJ485 (VHJ485Q) /CSM/VH/VHJ4-D/VHJ485Q.Seq.d/ 1382 0.0
AHC607 (AHC607Q) /CSM/AH/AHC6-A/AHC607Q.Seq.d/ 1346 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF481923|AF481923.1 Dictyostelium discoideum cyclic GMP-binding protein C (gbpC) gene, complete cds. 1485 0.0 1
AL805930|AL805930.16 Mouse DNA sequence from clone RP23-455B8 on chromosome 4. 34 0.28 2
AC161520|AC161520.6 Mus musculus chromosome 7, clone RP24-282D19, complete sequence. 44 0.51 4
AB002105|AB002105.2 Candida tropicalis gene for D-xylose reductase I,II, complete cds. 44 0.90 2
AB002106|AB002106.1 Candida tropicalis DNA for D-xylose reductase II,III, complete cds. 44 0.93 2
AC167243|AC167243.3 Mus musculus BAC clone RP24-144E2 from chromosome 9, complete sequence. 46 2.0 1
AC137848|AC137848.31 Mus musculus chromosome 9, clone RP24-118I23, complete sequence. 46 2.0 1
AC021008|AC021008.10 Mus musculus chromosome 15, clone RP23-59C1, complete sequence. 46 2.0 1
AC100745|AC100745.8 Mus musculus chromosome 15, clone RP24-372F6, complete sequence. 46 2.0 1
AC027139|AC027139.5 Homo sapiens, clone RP11-1H8, complete sequence. 46 2.0 1
dna update 2005.11.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8MVR1) RecName: Full=Cyclic GMP-binding protein C; EC... 468 e-130
(Q95KH6) RecName: Full=Ras-GEF domain-containing family member 1... 87 1e-15
AL645913_2(AL645913|pid:none) Mouse DNA sequence from clone RP23... 87 2e-15
(Q9D300) RecName: Full=Ras-GEF domain-containing family member 1... 87 2e-15
AK093160_1(AK093160|pid:none) Homo sapiens cDNA FLJ35841 fis, cl... 85 7e-15
BC057759_1(BC057759|pid:none) Homo sapiens RasGEF domain family,... 85 7e-15
BC036802_1(BC036802|pid:none) Homo sapiens RasGEF domain family,... 85 7e-15
(A0JM95) RecName: Full=Ras-GEF domain-containing family member 1... 85 7e-15
(Q8N431) RecName: Full=Ras-GEF domain-containing family member 1... 85 7e-15
(Q0VAM2) RecName: Full=Ras-GEF domain-containing family member 1... 84 9e-15
protein update 2009. 4.12
PSORT

psg: 0.75 gvh: 0.27 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHR286 is cyt

5' end seq. ID CHR286F
5' end seq.
>CHR286F.Seq
AGAGATTATAGATTGGATTACCAAATGTATGCCAATTAAAAGAGAAGAAGCATCCATTTT
AGTTTTGGATATGTTGATGAAACAATTCTTTATTCAAATTTCAGATGATGGTATACCCAT
TTCAAATCAAAAAGGTACCAATCCAACCTTTTCAGATTCACCAACCTCATTCTATATGTT
TTTAGAGGACGATCCAGAATTGATTGCTCGTCAATACACTTTCCTTGAATTGAAATATCT
TCAAAATATTCATCCAAGAGAATTGTTGGGTTTCTCTGTTGGTTTGGTAATGCCAAATGA
AAATGAAAAGGATCCTGAGAAATGGAGACAATCAAATTTCCCACATATCTATGATTATTT
TAGATGGTTCAATAAGATGACAATGTTAGTTAGTACAGAAATTTTAAGACAAAGAGATAT
TAAACAACGTGCTTCAATCATTGAAAAGTATATCTCTATCGCATTGGAGTATCTTAGTCT
TTGGAATTTCAATGGTATCATGCAAGTATTAAGTTCACTCCATAGTGAACCAATTTCAAG
ACTCTCTGCAACTTGGGCAAAAGTTTCTCAGAGATCAATGGATTGTTTCTATGAACTCTC
ACGTCTTATGTTACCCGAATCCANNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID CHR286Z
3' end seq.
>CHR286Z.Seq
NNNNNNNNNNCATGTTCATTAAACCGTTCCGGTAGATTGTATATCTCTCAACAACATGTT
TGTTTCTACAGTAAATTCTTTGGTTATAAAACTAAAAAGGTAATTCCATTCAAAAATATT
GACAAACTAATTTGTATCAATGTCAATCAAATAGAACTCACTCGTCTTAAAAACACCGTA
CCAAGTAATTATCGTTTAACTTTCCAAACTGGCAAAGATCGTGAAGATGCTTTCAGTATG
ATTCATATCCTTTGGGATTCATCAAAAGTCTCCAATTCCTCCTCTGATGAAGTCAAAAAT
AAATTGGCTGCCGAAAGAAAGAAAGTCAATAATCTTACACTCAAAACTCGTTCCAATAAA
AACAAAGGCGATGAACTCACCAAAGAGGATTGGGAATTAATCGGTTGTGAAGGTTCACGT
TCCTCCACTTTCAAAAAGGATGAAGTAATCATTCGTGAAGGTGAACGTATGCAAAAGATT
TTCCAAATTGGTAAAGGTGTTTGTCGTATTGAAAAATCAGTACCTGTTGCTCCTGGCTCT
TCTGAAATGAAAAAAGTTGTACTTGGAACAATGAAACAAGATGATACCTTTGGTGAAATC
ACTTACCTCTTAAATGGTGAAACCACTGCTGATGTCATTGCTGACACTGATCAAACCGAG
GTTTATACAATCGAAGGTCAATTTGTAAATATTTTATTCGATTTAAATCCTGCTTTAGCT
TCAAGATGGTTTAAATATTTAGCCACTGCTTTAAACAAAACTTTAATNAAAGAGAATCAC
A
Length of 3' end seq. 781
Connected seq. ID CHR286P
Connected seq.
>CHR286P.Seq
AGAGATTATAGATTGGATTACCAAATGTATGCCAATTAAAAGAGAAGAAGCATCCATTTT
AGTTTTGGATATGTTGATGAAACAATTCTTTATTCAAATTTCAGATGATGGTATACCCAT
TTCAAATCAAAAAGGTACCAATCCAACCTTTTCAGATTCACCAACCTCATTCTATATGTT
TTTAGAGGACGATCCAGAATTGATTGCTCGTCAATACACTTTCCTTGAATTGAAATATCT
TCAAAATATTCATCCAAGAGAATTGTTGGGTTTCTCTGTTGGTTTGGTAATGCCAAATGA
AAATGAAAAGGATCCTGAGAAATGGAGACAATCAAATTTCCCACATATCTATGATTATTT
TAGATGGTTCAATAAGATGACAATGTTAGTTAGTACAGAAATTTTAAGACAAAGAGATAT
TAAACAACGTGCTTCAATCATTGAAAAGTATATCTCTATCGCATTGGAGTATCTTAGTCT
TTGGAATTTCAATGGTATCATGCAAGTATTAAGTTCACTCCATAGTGAACCAATTTCAAG
ACTCTCTGCAACTTGGGCAAAAGTTTCTCAGAGATCAATGGATTGTTTCTATGAACTCTC
ACGTCTTATGTTACCCGAATCCA----------CATGTTCATTAAACCGTTCCGGTAGAT
TGTATATCTCTCAACAACATGTTTGTTTCTACAGTAAATTCTTTGGTTATAAAACTAAAA
AGGTAATTCCATTCAAAAATATTGACAAACTAATTTGTATCAATGTCAATCAAATAGAAC
TCACTCGTCTTAAAAACACCGTACCAAGTAATTATCGTTTAACTTTCCAAACTGGCAAAG
ATCGTGAAGATGCTTTCAGTATGATTCATATCCTTTGGGATTCATCAAAAGTCTCCAATT
CCTCCTCTGATGAAGTCAAAAATAAATTGGCTGCCGAAAGAAAGAAAGTCAATAATCTTA
CACTCAAAACTCGTTCCAATAAAAACAAAGGCGATGAACTCACCAAAGAGGATTGGGAAT
TAATCGGTTGTGAAGGTTCACGTTCCTCCACTTTCAAAAAGGATGAAGTAATCATTCGTG
AAGGTGAACGTATGCAAAAGATTTTCCAAATTGGTAAAGGTGTTTGTCGTATTGAAAAAT
CAGTACCTGTTGCTCCTGGCTCTTCTGAAATGAAAAAAGTTGTACTTGGAACAATGAAAC
AAGATGATACCTTTGGTGAAATCACTTACCTCTTAAATGGTGAAACCACTGCTGATGTCA
TTGCTGACACTGATCAAACCGAGGTTTATACAATCGAAGGTCAATTTGTAAATATTTTAT
TCGATTTAAATCCTGCTTTAGCTTCAAGATGGTTTAAATATTTAGCCACTGCTTTAAACA
AAACTTTAATNAAAGAGAATCACA
Length of connected seq. 1394
Full length Seq ID -
Full length Seq. -
Length of full length seq. -