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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR281
Library CH
(Link to library)
Clone ID CHR281
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16244-1
Original site URL
Representative seq. ID CHR281E
(Link to Original site)
Representative DNA sequence 
>CHR281 (CHR281Q) /CSM/CH/CHR2-D/CHR281Q.Seq.d/
ATATTTAATAAACTAATAGTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTA
TTTTTAATAGTAATAATTAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAG
TATGATTATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAAT
GTTGCAAATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTNTAATTCA
GTGCCGCTTCGTATCACTTNTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTT
AGTGATGAAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAA
GGCTCAATGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTG
GGTGGTGATTACATTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCAT
GTCCCAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCT
GAACAACTTGTTTTACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAA
AAATCTACTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTA
TTTTTACAATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAA
ATAAATAAAAAAAATGTTTTCAAATA
sequence update 2002.10.27
Translated Amino Acid sequence 
ifnkliv*n*NIKMHVLNLLFLIVIINILIFSVQSYTLKKYDYGQFLVIASGPVINKKFN
VANHQVSNFLLTKDENDXNSVPLRITXDGAPEFLIFYSTFSDEIASEKNSNKTNITTPLE
GSMCISSVYSFSIKMNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSS
EQLVLQSDGETVVQKNIENQKSTASTPLVNGVSIFSTVLLFLQLII*nvltktlfffkkk
inkknvfk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifnkliv*n*NIKMHVLNLLFLIVIINILIFSVQSYTLKKYDYGQFLVIASGPVINKKFN
VANHQVSNFLLTKDENDXNSVPLRITXDGAPEFLIFYSTFSDEIASEKNSNKTNITTPLE
GSMCISSVYSFSIKMNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSS
EQLVLQSDGETVVQKNIENQKSTASTPLVNGVSIFSTVLLFLQLII*nvltktlfffkkk
inkknvfk


Frame B:
ylin**fktkisrcmc*iyyf****lif*fflynhip*ksmimvsf*lspvgq*liknlm
lqitryqtfy*qkmkmixiqcrfvslxmehqnf*sftvllvmklqvkkiqtkqilplhwk
aqcvslvsilfqsk*titswvvitlsqf*vtlmfqnatsmsq*tkltknlkvlyyfqhll
nnlfynlmvkqsfkki*riknlllqhh*smefqffqqffyfyn**sktf*qklsfflkkk
*ikkmfsn


Frame C:
i**tnslklkyqdacvkfiifnsnn*yfnffctiiylekv*lwsvfsyrqwasn**ki*c
ckspgiklftnkr*k*x*fsaasyhx*wstrifnllqyf***nck*kkfkqnkyyhsigr
lnvyl*clfffnqneqlplgw*lhylnsr*l*cfkmlqacpskps*prt*kycitfnif*
ttcfti*w*nsrskkyreskiycfnttsqwsfnffnssfiftinnlkrfnknslff*kkn
k*kkcfqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR281 (CHR281Q) /CSM/CH/CHR2-D/CHR281Q.Seq.d/                       1110   0.0
SFJ286 (SFJ286Q) /CSM/SF/SFJ2-D/SFJ286Q.Seq.d/                       1094   0.0
SHG360 (SHG360Q) /CSM/SH/SHG3-C/SHG360Q.Seq.d/                       1088   0.0
AHB431 (AHB431Q) /CSM/AH/AHB4-B/AHB431Q.Seq.d/                       1088   0.0
SSD160 (SSD160Q) /CSM/SS/SSD1-C/SSD160Q.Seq.d/                       1086   0.0
CHM774 (CHM774Q) /CSM/CH/CHM7-D/CHM774Q.Seq.d/                       1082   0.0
CFG164 (CFG164Q) /CSM/CF/CFG1-C/CFG164Q.Seq.d/                       1082   0.0
AHM291 (AHM291Q) /CSM/AH/AHM2-D/AHM291Q.Seq.d/                       1076   0.0
CHS437 (CHS437Q) /CSM/CH/CHS4-B/CHS437Q.Seq.d/                       1070   0.0
CHG875 (CHG875Q) /CSM/CH/CHG8-D/CHG875Q.Seq.d/                       1070   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH947847|BH947847.1 obu93b02.b1 B.oleracea002 Brassica oleracea genomic, genomic surveysequence.    36   0.052  2
AJ862046|AJ862046.1 Brassica rapa subsp. pekinensis GSS, clone KBrH058D05, end read,  primer M13(forward).    46   1.0    1
BX957221|BX957221.1 Methanococcus maripaludis S2 complete genome; segment 3/5.    38   1.2    7
CR847928|CR847928.12 Zebrafish DNA sequence from clone DKEYP-67E7 in linkage group 1.    38   1.8    4
AE002151|AE002151.1 Ureaplasma urealyticum section 52 of 59 of the complete genome.    32   1.8    3
AC069083|AC069083.3 Homo sapiens chromosome 3 clone CTD-2006H8 map 3, WORKING DRAFT SEQUENCE, 16 unordered pieces.    34   2.0    2
AC133478|AC133478.2 Homo sapiens 3 BAC RP11-472P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   2.0    2
BU438831|BU438831.1 604142434F1 CSEQRBN11 Gallus gallus cDNA clone ChEST977c10 5', mRNA sequence.    36   2.1    2
BH515899|BH515899.1 BOGPQ37TR BOGP Brassica oleracea genomic clone BOGPQ37, DNA sequence.    40   2.2    2
AJ741336|AJ741336.1 Gallus gallus EST, clone 1c23r4.               36   2.4    2
dna update 2005.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q11121) RecName: Full=Lysophospholipase;          EC=3.1.1.5; A...    37   0.81
AE008384_3094(AE008384|pid:none) Methanosarcina mazei strain Goe...    37   0.81
AM114193_2667(AM114193|pid:none) Uncultured methanogenic archaeo...    36   1.1
CR382126_749(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    35   2.3
AB1261(AB1261) shikimate 5-dehydrogenase (AroD) homolog lmo1490 ...    35   3.1
AP002071_19(AP002071|pid:none) Oryza sativa Japonica Group genom...    34   4.0
AY093107_1(AY093107|pid:none) Arabidopsis thaliana unknown prote...    34   5.2
CP000685_2192(CP000685|pid:none) Flavobacterium johnsoniae UW101...    34   5.2
AL033502_6(AL033502|pid:none) C.albicans cosmid Ca38F10.               33   6.8
CP001037_2648(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    33   6.8
protein update 2008.11. 9
PSORT 

 psg: 1.00  gvh: 0.56  alm: 0.16  top: 0.43  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for CHR281 is end
5' end seq. ID CHR281F
5' end seq. 
>CHR281F.Seq
ATATTTAATAAACTAATAGTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTA
TTTTTAATAGTAATAATTAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAG
TATGATTATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAAT
GTTGCAAATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTCTAATTCA
GTGCCGCTTCGTATCACTTCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTT
AGTGATGAAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAA
GGCTCAATGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTG
GGTGGTGATTACATTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCAT
GTCCCAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCT
GAACAACTTGTTTTACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAA
AAATCTACTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTA
TTTTTACNNNNNNNNNN
Length of 5' end seq. 677
3' end seq. ID CHR281Z
3' end seq. 
>CHR281Z.Seq
NNNNNNNNNNTAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAGTATGATT
ATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAATGTTGCAA
ATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTTTAATTCAGTGCCGC
TTNGTATCACTTTTGATGGAGCACCAGAATTTTTAATNTTTTACAGTACTTTTAGTGATG
AAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAA
TGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTG
ATTACATTATNTCAATTNTAGGTAACTNTGATGTTTCAAAATGCTACAAGCATGTCCCAG
TAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATNTTNTGAACAAC
TTGTTTTACAATNTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATNTA
CTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTATTTTTAC
AATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAAATAAATA
AAAAAAATGTTTTCAAATA
Length of 3' end seq. 679
Connected seq. ID CHR281P
Connected seq. 
>CHR281P.Seq
ATATTTAATAAACTAATAGTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTA
TTTTTAATAGTAATAATTAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAG
TATGATTATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAAT
GTTGCAAATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTCTAATTCA
GTGCCGCTTCGTATCACTTCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTT
AGTGATGAAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAA
GGCTCAATGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTG
GGTGGTGATTACATTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCAT
GTCCCAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCT
GAACAACTTGTTTTACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAA
AAATCTACTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTA
TTTTTAC----------TAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAG
TATGATTATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAAT
GTTGCAAATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTTTAATTCA
GTGCCGCTTNGTATCACTTTTGATGGAGCACCAGAATTTTTAATNTTTTACAGTACTTTT
AGTGATGAAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAA
GGCTCAATGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTG
GGTGGTGATTACATTATNTCAATTNTAGGTAACTNTGATGTTTCAAAATGCTACAAGCAT
GTCCCAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATNTTNT
GAACAACTTGTTTTACAATNTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAA
AAATNTACTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTA
TTTTTACAATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAA
ATAAATAAAAAAAATGTTTTCAAATA
Length of connected seq. 1336
Full length Seq ID CHR281E
Full length Seq. 
>CHR281E.Seq
ATATTTAATAAACTAATAGTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTA
TTTTTAATAGTAATAATTAATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAG
TATGATTATGGTCAGTTTTTAGTTATCGCCAGTGGGCCAGTAATTAATAAAAAATTTAAT
GTTGCAAATCACCAGGTATCAAACTTTTTACTAACAAAAGATGAAAATGATTNTAATTCA
GTGCCGCTTCGTATCACTTNTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTT
AGTGATGAAATTGCAAGTGAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAA
GGCTCAATGTGTATCTCTAGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTG
GGTGGTGATTACATTATCTCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCAT
GTCCCAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCT
GAACAACTTGTTTTACAATCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAA
AAATCTACTGCTTCAACACCACTAGTCAATGGAGTTTCAATTTTTTCAACAGTTCTTTTA
TTTTTACAATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTTTTAAAAAAAAA
ATAAATAAAAAAAATGTTTTCAAATA
Length of full length seq. 746