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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR278
Library CH
(Link to library)
Clone ID CHR278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHR278 (CHR278Q) /CSM/CH/CHR2-D/CHR278Q.Seq.d/
XXXXXXXXXXATGCNNAATATGGNAGCANNCNATTCGATANAANATGTGCTCNTNATAAT
AGTAAATGTCAAGAAGGTGTCTGTGTAAACAANNGTGCTATCGGTAAAAATGATG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---AXYGSXXFDXXCAXXNSKCQEGVCVNXXAIGKND
Translated Amino Acid sequence (All Frames) 
Frame A:
---cxiwxxxirxxmcsx***msrrclckqxcyr*k*


Frame B:
---AXYGSXXFDXXCAXXNSKCQEGVCVNXXAIGKND


Frame C:
---xnmxaxxsixxvlxiivnvkkvsv*txvlsvkmm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR278 (CHR278Q) /CSM/CH/CHR2-D/CHR278Q.Seq.d/                        137   4e-32
CHI391 (CHI391Q) /CSM/CH/CHI3-D/CHI391Q.Seq.d/                        123   6e-28
CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                        121   2e-27
SSG856 (SSG856Q) /CSM/SS/SSG8-C/SSG856Q.Seq.d/                        121   2e-27
SSG816 (SSG816Q) /CSM/SS/SSG8-A/SSG816Q.Seq.d/                        121   2e-27
SSD840 (SSD840Q) /CSM/SS/SSD8-B/SSD840Q.Seq.d/                        121   2e-27
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                        121   2e-27
SSC134 (SSC134Q) /CSM/SS/SSC1-B/SSC134Q.Seq.d/                        121   2e-27
SLK625 (SLK625Q) /CSM/SL/SLK6-B/SLK625Q.Seq.d/                        121   2e-27
SLI603 (SLI603Q) /CSM/SL/SLI6-A/SLI603Q.Seq.d/                        121   2e-27
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC152836|AC152836.3 Bos taurus clone CH240-18H23, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    40   8.3    1
AC127136|AC127136.5 Rattus norvegicus clone CH230-209P6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   8.3    1
AC107340|AC107340.5 Rattus norvegicus clone CH230-13E13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   8.3    1
AC006316|AC006316.2 Homo sapiens PAC clone RP4-672O11 from 7q22-31.2, complete sequence.    40   8.3    1
dna update 2005.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 53   3e-06
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 35   1.0
protein update 2009. 1. 4
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for CHR278 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR278Z
3' end seq. 
>CHR278Z.Seq
NNNNNNNNNNATGCNNAATATGGNAGCANNCNATTCGATANAANATGTGCTCNTNATAAT
AGTAAATGTCAAGAAGGTGTCTGTGTAAACAANNGTGCTATCGGTAAAAATGATG
Length of 3' end seq. 115
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -