>CHR268 (CHR268Q) /CSM/CH/CHR2-C/CHR268Q.Seq.d/
XXXXXXXXXXCCAATCATGCATTTTGATAATGTTACTTTTTCATACAGCGGTAAAGAAGC
AGATGTTTTATATAGAAATTTAGATTTAGCTATCGATTTAGACTCTAGAATTGCACTTGT
TGGTCCAAATGGTGCTGGTAAAAGTACTTTATTGAAGCTTATGGTCGGTCAAATCTCACC
AACTCAAGGTTTCATTAAAAAACATAGTCATCTTAAAATGGCTCGTTATCATCAACATGC
TCATGAAGTTTTAGATCTCACCGCTACTCCATTGGATTTTGTTCGTTCTAAATTTGCTCA
TATGAATAAAGATACCGAAGAATGGCGTCGTGAAATTGGTAGATTTGGTGTTACTGGTAA
AGCTCAAACTGAAGCTATTGGTTGTATGTCTGATGGTATTAAATCTCGTTTAATTTTCTG
TCTTATGGCTCTCGAAAATCCACATCTTTTATTACTTGATGAACCAACAAATCATTTAGA
TATGGAATGTATTGATAGTTTAGCTTTGGCCATCAATTCTTTCCCCGGAGGCATGATATT
AGTATCTCACGATTTTAGATTAATCTCTCAAGTTGCAAAAGAAATTTGGGTTTGTGATAA
TAAAACTATTACTAAATGGGCAGGTGATATCACAAGCTATAAGAATCACTTAAAGGCTCA
AATGAGAGATCTCACAAAGCAAGGCGCATTAGCATCATTAAAAAAATAATAGATAATAAT
ATAAATAAAG

---IMHFDNVTFSYSGKEADVLYRNLDLAIDLDSRIALVGPNGAGKSTLLKLMVGQISPT
QGFIKKHSHLKMARYHQHAHEVLDLTATPLDFVRSKFAHMNKDTEEWRREIGRFGVTGKA
QTEAIGCMSDGIKSRLIFCLMALENPHLLLLDEPTNHLDMECIDSLALAINSFPGGMILV
SHDFRLISQVAKEIWVCDNKTITKWAGDITSYKNHLKAQMRDLTKQGALASLKK**iii*
ik

Frame A:
---qscilimllfhtavkkqmfyiei*i*lsi*tlelhllvqmvlvkvly*slwsvkshq
lkvslknivilkwlviinmlmkf*ispllhwilfvlnlli*ikipkngvvklvdlvllvk
lklkllvvclmvlnlv*fsvlwlskihifyylmnqqii*iwnvliv*lwpsilspea*y*
yltild*slklqkkfgfviiklllngqvisqairit*rlk*eisqskah*hh*knnr**y
k*


Frame B:
---nhaf**cyffiqr*rsrcfi*kfrfsyrfrl*nctcwskwcw*kyfieaygrsnltn
srfh*kt*ss*ngslsstcs*sfrshrysigfcsf*icsye*ryrrmas*nw*iwcyw*s
sn*sywlyv*wy*isfnflsygsrkstsfit**tnksfrygmy**fsfghqffprrhdis
isrf*inlssckrnlgl***nyy*mgr*yhkl*eslkgsnershkarrisiikkiidnni
nk


Frame C:
---IMHFDNVTFSYSGKEADVLYRNLDLAIDLDSRIALVGPNGAGKSTLLKLMVGQISPT
QGFIKKHSHLKMARYHQHAHEVLDLTATPLDFVRSKFAHMNKDTEEWRREIGRFGVTGKA
QTEAIGCMSDGIKSRLIFCLMALENPHLLLLDEPTNHLDMECIDSLALAINSFPGGMILV
SHDFRLISQVAKEIWVCDNKTITKWAGDITSYKNHLKAQMRDLTKQGALASLKK**iii*
ik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR268 (CHR268Q) /CSM/CH/CHR2-C/CHR268Q.Seq.d/                       1386   0.0
CFH411 (CFH411Q) /CSM/CF/CFH4-A/CFH411Q.Seq.d/                       1386   0.0
AFK870 (AFK870Q) /CSM/AF/AFK8-C/AFK870Q.Seq.d/                       1386   0.0
CFJ860 (CFJ860Q) /CSM/CF/CFJ8-C/CFJ860Q.Seq.d/                       1376   0.0
CHE373 (CHE373Q) /CSM/CH/CHE3-D/CHE373Q.Seq.d/                       1366   0.0
AFA622 (AFA622Q) /CSM/AF/AFA6-A/AFA622Q.Seq.d/                       1366   0.0
VSG243 (VSG243Q) /CSM/VS/VSG2-B/VSG243Q.Seq.d/                       1364   0.0
VSI112 (VSI112Q) /CSM/VS/VSI1-A/VSI112Q.Seq.d/                       1360   0.0
SFK663 (SFK663Q) /CSM/SF/SFK6-C/SFK663Q.Seq.d/                       1358   0.0
CFH693 (CFH693Q) /CSM/CF/CFH6-D/CFH693Q.Seq.d/                       1346   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF479254|AF479254.1 Dictyostelium discoideum non-transporter ABC protein AbcF2 (abcF2) gene, complete cds.   926   0.0    3
CV672877|CV672877.1 RET7SJ_07H10.T7 Schistosoma japonicum reverse cDNA Schistosoma japonicum cDNA, mRNA sequence.    56   6e-11  3
CV464952|CV464952.1 taj18c04.x1 Hydra EST UCI 5 ALP Hydra magnipapillata cDNA 3' similar to TR:Q9VXR5 Q9VXR5 CG9281 PROTEIN. ;, mRNA sequence.    44   5e-10  3
BU794591|BU794591.1 SJF2DFC05 SJF Schistosoma japonicum cDNA, mRNA sequence.    56   1e-09  2
CV683409|CV683409.1 sjs1_E08_sjs2-001D06-T7 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   1e-09  2
CV740118|CV740118.1 SJAL_025_15.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    56   1e-09  2
CD681054|CD681054.1 tab67f01.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VXR5 Q9VXR5 CG9281 PROTEIN. ;, mRNA sequence.    44   7e-09  3
CX836018|CX836018.1 tal55e04.x2 Hydra EST UCI 7 Hydra magnipapillata cDNA 3' similar to TR:Q9VXR5 Q9VXR5 CG9281 PROTEIN. ;, mRNA sequence.    44   8e-09  3
DN138048| ATP-binding cassette, sub-family F (GCN20), mRNA sequence.    44   8e-09  3
DN138120| Similar to ATP-binding cassette, sub-family F (GCN20), member 2 [Danio rerio], mRNA sequence.    44   9e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T6B7) RecName: Full=ABC transporter F family member 2;  &AF47...   471   e-131
CU640366_449(CU640366|pid:none) Podospora anserina genomic DNA c...   268   1e-70
AP007164_250(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...   267   3e-70
AJ719522_1(AJ719522|pid:none) Gallus gallus mRNA for hypothetica...   265   1e-69
AM920437_1477(AM920437|pid:none) Penicillium chrysogenum Wiscons...   265   1e-69
CR382130_914(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   264   2e-69
BC129119_1(BC129119|pid:none) Rattus norvegicus ATP-binding cass...   263   3e-69
AK137233_1(AK137233|pid:none) Mus musculus adult male urinary bl...   263   3e-69
AF261091_1(AF261091|pid:none) Homo sapiens iron inhibited ABC tr...   263   3e-69
AJ005016_1(AJ005016|pid:none) Homo sapiens mRNA for putative ABC...   263   3e-69

 psg: 0.75  gvh: 0.60  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHR268 is cyt

>CHR268Z.Seq
NNNNNNNNNNCCAATCATGCATTTTGATAATGTTACTTTTTCATACAGCGGTAAAGAAGC
AGATGTTTTATATAGAAATTTAGATTTAGCTATCGATTTAGACTCTAGAATTGCACTTGT
TGGTCCAAATGGTGCTGGTAAAAGTACTTTATTGAAGCTTATGGTCGGTCAAATCTCACC
AACTCAAGGTTTCATTAAAAAACATAGTCATCTTAAAATGGCTCGTTATCATCAACATGC
TCATGAAGTTTTAGATCTCACCGCTACTCCATTGGATTTTGTTCGTTCTAAATTTGCTCA
TATGAATAAAGATACCGAAGAATGGCGTCGTGAAATTGGTAGATTTGGTGTTACTGGTAA
AGCTCAAACTGAAGCTATTGGTTGTATGTCTGATGGTATTAAATCTCGTTTAATTTTCTG
TCTTATGGCTCTCGAAAATCCACATCTTTTATTACTTGATGAACCAACAAATCATTTAGA
TATGGAATGTATTGATAGTTTAGCTTTGGCCATCAATTCTTTCCCCGGAGGCATGATATT
AGTATCTCACGATTTTAGATTAATCTCTCAAGTTGCAAAAGAAATTTGGGTTTGTGATAA
TAAAACTATTACTAAATGGGCAGGTGATATCACAAGCTATAAGAATCACTTAAAGGCTCA
AATGAGAGATCTCACAAAGCAAGGCGCATTAGCATCATTAAAAAAATAATAGATAATAAT
ATAAATAAAG