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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR255
Library CH
(Link to library)
Clone ID CHR255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16458-1
Original site URL
Representative seq. ID CHR255P
(Link to Original site)
Representative DNA sequence 
>CHR255 (CHR255Q) /CSM/CH/CHR2-C/CHR255Q.Seq.d/
CATTTTGATCATGAAAGAATTCCANAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCAT
GGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTANA
XXXXXXXXXXCNATCAAGAAGATTATGGTAAAACCATCNCCAGCTTTATCTCAACCAAAT
TTATTATNTGGTGATATCGTTAGTCGTAGAATNTCAGTNATCATNGAAAAAGGTGTC
sequence update 2002.10.25
Translated Amino Acid sequence 
HFDHERIPXRIVHARGTGAHGYFLSYKDHSKLTKADFLSX---

---IKKIMVKPSPALSQPNLLXGDIVSRRXSVIXEKGV
Translated Amino Acid sequence (All Frames) 
Frame A:
HFDHERIPXRIVHARGTGAHGYFLSYKDHSKLTKADFLSX---

---xsrrlw*nhxqlylnqiyyxvislvvexqxsxkkv

Frame B:
ilimkefxkelfmqeeqelmviffliriivn*qkqis*v---

---xqedygktixsfistkfixw*yr*s*nxsxhxkrc

Frame C:
f*s*knsxkncsckrnrsswlfsfl*gs**inksrflex---

---IKKIMVKPSPALSQPNLLXGDIVSRRXSVIXEKGV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR255 (CHR255Q) /CSM/CH/CHR2-C/CHR255Q.Seq.d/                        363   e-100
SHL476 (SHL476Q) /CSM/SH/SHL4-D/SHL476Q.Seq.d/                        228   3e-59
SFK745 (SFK745Q) /CSM/SF/SFK7-B/SFK745Q.Seq.d/                        228   3e-59
SFK322 (SFK322Q) /CSM/SF/SFK3-A/SFK322Q.Seq.d/                        228   3e-59
SFK117 (SFK117Q) /CSM/SF/SFK1-A/SFK117Q.Seq.d/                        228   3e-59
SFI509 (SFI509Q) /CSM/SF/SFI5-A/SFI509Q.Seq.d/                        228   3e-59
SFH343 (SFH343Q) /CSM/SF/SFH3-B/SFH343Q.Seq.d/                        228   3e-59
SFF845 (SFF845Q) /CSM/SF/SFF8-B/SFF845Q.Seq.d/                        228   3e-59
SFF535 (SFF535Q) /CSM/SF/SFF5-B/SFF535Q.Seq.d/                        228   3e-59
SFE174 (SFE174Q) /CSM/SF/SFE1-D/SFE174Q.Seq.d/                        228   3e-59
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY386221|AY386221.1 Dictyostelium discoideum catalase B gene, complete cds.   228   e-101  2
AF183177|AF183177.1 Dictyostelium discoideum catalase B (catB) mRNA, partial cds.   176   1e-40  1
AE017026|AE017026.1 Bacillus anthracis str. Ames section 3 of 18 of the complete genome.    46   2e-05  2
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome.    54   0.001  1
AE017000|AE017000.1 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome.    54   0.001  1
BP187401|BP187401.1 Dugesia japonica cDNA, clone: 00449_HN, expressed in the head.    48   0.079  1
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome.    46   0.31   1
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome.    46   0.31   1
AC091609|AC091609.2 Homo sapiens chromosome 1 clone RP11-109I2, complete sequence.    32   0.64   2
AC113159|AC113159.4 Rattus norvegicus clone RP32-499P2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   0.70   2
dna update 2005.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DH8) RecName: Full=Catalase-B;          EC=1.11.1.6;               84   1e-15
CP000949_5083(CP000949|pid:none) Pseudomonas putida W619, comple...    72   7e-12
CP000284_2371(CP000284|pid:none) Methylobacillus flagellatus KT,...    71   1e-11
CP000094_64(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, co...    70   2e-11
CP000076_74(CP000076|pid:none) Pseudomonas fluorescens Pf-5, com...    69   4e-11
CP000712_130(CP000712|pid:none) Pseudomonas putida F1, complete ...    69   5e-11
CP000075_280(CP000075|pid:none) Pseudomonas syringae pv. syringa...    67   1e-10
CP000653_1701(CP000653|pid:none) Enterobacter sp. 638, complete ...    67   2e-10
CP000946_1860(CP000946|pid:none) Escherichia coli ATCC 8739, com...    67   2e-10
PDBN(1CF9)A MOL_ID: 1;MOL_ID: 1; MOLECULE: CATALASE HPII; MOLECU...    67   2e-10
protein update 2009. 4.12
PSORT 

 psg: 0.70  gvh: 0.40  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for CHR255 is cyt
5' end seq. ID CHR255F
5' end seq. 
>CHR255F.Seq
CATTTTGATCATGAAAGAATTCCANAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCAT
GGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTANA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID CHR255Z
3' end seq. 
>CHR255Z.Seq
NNNNNNNNNNCNATCAAGAAGATTATGGTAAAACCATCNCCAGCTTTATCTCAACCAAAT
TTATTATNTGGTGATATCGTTAGTCGTAGAATNTCAGTNATCATNGAAAAAGGTGTC
Length of 3' end seq. 117
Connected seq. ID CHR255P
Connected seq. 
>CHR255P.Seq
CATTTTGATCATGAAAGAATTCCANAAAGAATTGTTCATGCAAGAGGAACAGGAGCTCAT
GGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTANA
----------CNATCAAGAAGATTATGGTAAAACCATCNCCAGCTTTATCTCAACCAAAT
TTATTATNTGGTGATATCGTTAGTCGTAGAATNTCAGTNATCATNGAAAAAGGTGTC
Length of connected seq. 227
Full length Seq ID -
Full length Seq. -
Length of full length seq. -