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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR250
Library CH
(Link to library)
Clone ID CHR250
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15776-1
Original site URL
Representative seq. ID CHR250P
(Link to Original site)
Representative DNA sequence 
>CHR250 (CHR250Q) /CSM/CH/CHR2-C/CHR250Q.Seq.d/
AAAAAGACACTATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACA
TGTCCAGAAAATAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACT
AATGAAAATTTTAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAAT
GGTTTTAAAGTTACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGT
GAAAGAAAAGGTTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTA
AGATATTTAGGAAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATT
TTTAGAGAGAGTGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGG
ATTCCAATTGGTATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTC
AAGGCACATTATGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATT
CAAATTTATTTAAACGATGGATTTAAAGGTGGTAATACCAATTTCTTTACCTCTGAGAAC
CCATTGTTXXXXXXXXXXATGGATTAAAGAGTGGTTTGGTTTTAATGTTTGGTAGTCAAA
CCACTGTTTTAGCCGCTTTTCAAGATGGTCAACAAATTGATGCAATCAATTTATCTATGA
TTGGTCAAGATATCATTGATGAAGCTAATAGCATAGCTGCAATGGCCGGTGAAAATTCTG
AATGTCATAAAGATTTGTATACTAAAAGTTACTCTTATCAAGATTCCTCCTATTCTACTA
CTAAAGGTGGTCTTTCATTAAAACCTACATGGTATCAAATGGTCAGAGTTAGTCTAGATT
TTGAAAATGAACAAAGAAATACTCCAACCTCCAAACAATTCATTACGAAGATTCCAGAAA
TCTACTTTAATCCACAACTCTCTGAAAAAAATAAAGCCTCTGAAAATATTATCGTTACAC
TCACCAATTTCGTCAATCAAATGGGAAATCGTCCAGCTTTTAAAAATAATTTAGATGATC
TCTCAAAATTGGTCATCACTGGTGGTTTCTCTTGTATTCCAGGTTTGGCTGAAAGAATTA
AAAAAGAATTGGAACCAAAGAATATAAATCAAATCTATTTTTCTGACACTCCTTACTGTG
ATCAAATCAAAGGTGCTAAAATTGATATTAATTTAACTGAATCTTTACATGATGGATATC
AAAAGGTTTAATAATAATTAATAACAATAACAACAACAATTTAATTTTAGGAGAAAATAT
TAAAAATATTAAATAAAATTTATTTATNCAAAGTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
kktll*LLYITMAEEGATTTCPENRVITGSDLLSFNENITNENFKPELLKRTDLKLSTSN
GFKVTNVLTKEECLHFIEESERKGYVSIEKEFPTGYRNNLRYLGKSDKLSDILWERLEAI
FRESDLEGVRPYGFDQKGVWIPIGIDNCFTFSKYLPGSRFKAHYDAVFADNPDRRSIYTI
QIYLNDGFKGGNTNFFTSENPL---

---GLKSGLVLMFGSQTTVLAAFQDGQQIDAINLSMIGQDIIDEANSIAAMAGENSECHK
DLYTKSYSYQDSSYSTTKGGLSLKPTWYQMVRVSLDFENEQRNTPTSKQFITKIPEIYFN
PQLSEKNKASENIIVTLTNFVNQMGNRPAFKNNLDDLSKLVITGGFSCIPGLAERIKKEL
EPKNINQIYFSDTPYCDQIKGAKIDINLTESLHDGYQKV***litittti*f*ekilkil
nkiylxkv
Translated Amino Acid sequence (All Frames) 
Frame A:
kktll*LLYITMAEEGATTTCPENRVITGSDLLSFNENITNENFKPELLKRTDLKLSTSN
GFKVTNVLTKEECLHFIEESERKGYVSIEKEFPTGYRNNLRYLGKSDKLSDILWERLEAI
FRESDLEGVRPYGFDQKGVWIPIGIDNCFTFSKYLPGSRFKAHYDAVFADNPDRRSIYTI
QIYLNDGFKGGNTNFFTSENPL---

---md*rvvwf*clvvkplf*plfkmvnklmqsiyl*lvkislmklia*lqwpvkilnvi
kicilkvtlikippilllkvvfh*nlhgikwselv*ilkmnkeilqppnnslrrfqkstl
ihnslkkikplkilslhspissikweivqllkii*misqnwsslvvslvfqvwlkelkkn
wnqri*iksifltlltvikskvlklili*lnlymmdikrfnnn**q*qqqfnfrrky*ky
*ikfiyxkf

Frame B:
krhyyncyi*qwqkkvqqqhvqkigl*qvviy*almktllmkilnlny*keqi*nyqpqm
vlklqmf*qkknvyillkkvkekvmfqlkknfqldivii*di*ervinyqifygkd*kqf
lerviwkvldlmvsikrefgfqlvliivlhlaniyqvvdsrhimmqylqttqidvqfipf
kfi*tmdlkvvipislplrthc---

---wikewfgfnvw*snhcfsrfsrwstn*cnqfiydwsryh**s**hscngr*kf*ms*
rfvy*klllsrfllfyy*rwsfiktymvsngqs*srf*k*tkkysnlqtihyedsrnll*
sttl*kk*sl*kyyrythqfrqsngksssf*k*fr*slkighhwwfllysrfg*kn*kri
gtkeyksnlff*hsll*snqrc*n*y*fn*ift*wiskgliiinnnnnnnlilgenikni
k*nlfxqs

Frame C:
kdtiiiviynngrrrcnnnmsrk*gynr**fikl**khy**kf*t*iikknrfkiinlkw
f*sykcfnkrrmftfy*rk*kkrlcfn*krisnwis**fkifrke**iiryfmgkirsnf
*re*fgrc*tlwfrskgsldsnwy**lfyi*qiftr**iqgtl*csicrqpr*tfnlyhs
nlfkrwi*rw*yqflyl*epiv---

---GLKSGLVLMFGSQTTVLAAFQDGQQIDAINLSMIGQDIIDEANSIAAMAGENSECHK
DLYTKSYSYQDSSYSTTKGGLSLKPTWYQMVRVSLDFENEQRNTPTSKQFITKIPEIYFN
PQLSEKNKASENIIVTLTNFVNQMGNRPAFKNNLDDLSKLVITGGFSCIPGLAERIKKEL
EPKNINQIYFSDTPYCDQIKGAKIDINLTESLHDGYQKV***litittti*f*ekilkil
nkiylxkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR250 (CHR250Q) /CSM/CH/CHR2-C/CHR250Q.Seq.d/                       2432   0.0
VHO869 (VHO869Q) /CSM/VH/VHO8-C/VHO869Q.Seq.d/                       1259   0.0
VHN322 (VHN322Q) /CSM/VH/VHN3-A/VHN322Q.Seq.d/                       1259   0.0
VHD843 (VHD843Q) /CSM/VH/VHD8-B/VHD843Q.Seq.d/                       1259   0.0
AHN561 (AHN561Q) /CSM/AH/AHN5-C/AHN561Q.Seq.d/                       1255   0.0
VHP263 (VHP263Q) /CSM/VH/VHP2-C/VHP263Q.Seq.d/                       1243   0.0
VHA752 (VHA752Q) /CSM/VH/VHA7-C/VHA752Q.Seq.d/                       1231   0.0
VHK771 (VHK771Q) /CSM/VH/VHK7-C/VHK771Q.Seq.d/                       1215   0.0
VHG569 (VHG569Q) /CSM/VH/VHG5-C/VHG569Q.Seq.d/                       1205   0.0
VHG486 (VHG486Q) /CSM/VH/VHG4-D/VHG486Q.Seq.d/                       1205   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   0.001  21
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38   0.003  12
CR381605|CR381605.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-156J19.    40   0.005  2
CT030000|CT030000.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40   0.005  2
BX175844|BX175844.1 Danio rerio genomic clone DKEY-180N6, genomic survey sequence.    40   0.007  2
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5.    34   0.011  15
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        36   0.031  20
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.074  11
AC063945|AC063945.16 Homo sapiens 12 BAC RP11-417A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40   0.14   3
AC090757|AC090757.2 Homo sapiens chromosome 18 clone RP11-701G2 map 18, LOW-PASS SEQUENCE SAMPLING.    46   0.14   6
dna update 2005.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954203_553(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    62   5e-08
CP000155_6431(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    60   2e-07
AM494953_5(AM494953|pid:none) Leishmania braziliensis chromosome...    60   2e-07
AM502234_5(AM502234|pid:none) Leishmania infantum chromosome 16.       54   1e-05
CP000083_1283(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    53   3e-05
CP000113_2153(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    52   4e-05
CP000828_4690(CP000828|pid:none) Acaryochloris marina MBIC11017,...    52   6e-05
AL390091_11(AL390091|pid:none) Neurospora crassa DNA linkage gro...    50   1e-04
CR378680_54(CR378680|pid:none) Photobacterium profundum SS9 chro...    48   7e-04
CP000155_5327(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    48   7e-04
protein update 2009. 4.12
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHR250 is cyt
5' end seq. ID CHR250F
5' end seq. 
>CHR250F.Seq
AAAAAGACACTATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACA
TGTCCAGAAAATAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACT
AATGAAAATTTTAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAAT
GGTTTTAAAGTTACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGT
GAAAGAAAAGGTTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTA
AGATATTTAGGAAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATT
TTTAGAGAGAGTGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGG
ATTCCAATTGGTATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTC
AAGGCACATTATGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATT
CAAATTTATTTAAACGATGGATTTAAAGGTGGTAATACCAATTTCTTTACCTCTGAGAAC
CCATTGTTNNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID CHR250Z
3' end seq. 
>CHR250Z.Seq
NNNNNNNNNNATGGATTAAAGAGTGGTTTGGTTTTAATGTTTGGTAGTCAAACCACTGTT
TTAGCCGCTTTTCAAGATGGTCAACAAATTGATGCAATCAATTTATCTATGATTGGTCAA
GATATCATTGATGAAGCTAATAGCATAGCTGCAATGGCCGGTGAAAATTCTGAATGTCAT
AAAGATTTGTATACTAAAAGTTACTCTTATCAAGATTCCTCCTATTCTACTACTAAAGGT
GGTCTTTCATTAAAACCTACATGGTATCAAATGGTCAGAGTTAGTCTAGATTTTGAAAAT
GAACAAAGAAATACTCCAACCTCCAAACAATTCATTACGAAGATTCCAGAAATCTACTTT
AATCCACAACTCTCTGAAAAAAATAAAGCCTCTGAAAATATTATCGTTACACTCACCAAT
TTCGTCAATCAAATGGGAAATCGTCCAGCTTTTAAAAATAATTTAGATGATCTCTCAAAA
TTGGTCATCACTGGTGGTTTCTCTTGTATTCCAGGTTTGGCTGAAAGAATTAAAAAAGAA
TTGGAACCAAAGAATATAAATCAAATCTATTTTTCTGACACTCCTTACTGTGATCAAATC
AAAGGTGCTAAAATTGATATTAATTTAACTGAATCTTTACATGATGGATATCAAAAGGTT
TAATAATAATTAATAACAATAACAACAACAATTTAATTTTAGGAGAAAATATTAAAAATA
TTAAATAAAATTTATTTATNCAAAGTTT
Length of 3' end seq. 748
Connected seq. ID CHR250P
Connected seq. 
>CHR250P.Seq
AAAAAGACACTATTATAATTGTTATATATAACAATGGCAGAAGAAGGTGCAACAACAACA
TGTCCAGAAAATAGGGTTATAACAGGTAGTGATTTATTAAGCTTTAATGAAAACATTACT
AATGAAAATTTTAAACCTGAATTATTAAAAAGAACAGATTTAAAATTATCAACCTCAAAT
GGTTTTAAAGTTACAAATGTTTTAACAAAAGAAGAATGTTTACATTTTATTGAAGAAAGT
GAAAGAAAAGGTTATGTTTCAATTGAAAAAGAATTTCCAACTGGATATCGTAATAATTTA
AGATATTTAGGAAAGAGTGATAAATTATCAGATATTTTATGGGAAAGATTAGAAGCAATT
TTTAGAGAGAGTGATTTGGAAGGTGTTAGACCTTATGGTTTCGATCAAAAGGGAGTTTGG
ATTCCAATTGGTATTGATAATTGTTTTACATTTAGCAAATATTTACCAGGTAGTAGATTC
AAGGCACATTATGATGCAGTATTTGCAGACAACCCAGATAGACGTTCAATTTATACCATT
CAAATTTATTTAAACGATGGATTTAAAGGTGGTAATACCAATTTCTTTACCTCTGAGAAC
CCATTGTT----------ATGGATTAAAGAGTGGTTTGGTTTTAATGTTTGGTAGTCAAA
CCACTGTTTTAGCCGCTTTTCAAGATGGTCAACAAATTGATGCAATCAATTTATCTATGA
TTGGTCAAGATATCATTGATGAAGCTAATAGCATAGCTGCAATGGCCGGTGAAAATTCTG
AATGTCATAAAGATTTGTATACTAAAAGTTACTCTTATCAAGATTCCTCCTATTCTACTA
CTAAAGGTGGTCTTTCATTAAAACCTACATGGTATCAAATGGTCAGAGTTAGTCTAGATT
TTGAAAATGAACAAAGAAATACTCCAACCTCCAAACAATTCATTACGAAGATTCCAGAAA
TCTACTTTAATCCACAACTCTCTGAAAAAAATAAAGCCTCTGAAAATATTATCGTTACAC
TCACCAATTTCGTCAATCAAATGGGAAATCGTCCAGCTTTTAAAAATAATTTAGATGATC
TCTCAAAATTGGTCATCACTGGTGGTTTCTCTTGTATTCCAGGTTTGGCTGAAAGAATTA
AAAAAGAATTGGAACCAAAGAATATAAATCAAATCTATTTTTCTGACACTCCTTACTGTG
ATCAAATCAAAGGTGCTAAAATTGATATTAATTTAACTGAATCTTTACATGATGGATATC
AAAAGGTTTAATAATAATTAATAACAATAACAACAACAATTTAATTTTAGGAGAAAATAT
TAAAAATATTAAATAAAATTTATTTATNCAAAGTTT
Length of connected seq. 1346
Full length Seq ID -
Full length Seq. -
Length of full length seq. -