CHR249
Library CH
(Link to library)
Clone ID CHR249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16497-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR249 (CHR249Q) /CSM/CH/CHR2-C/CHR249Q.Seq.d/
XXXXXXXXXXAAATGGTAATATTTTCCACACACCAATTAACAAATGTTCAGGTTGTATGA
CTTGTAATCCAGTTTCTGGTAATTGTGATTTATCCGACNCCGTTTGCCAAGATGGTAATG
AATGTACTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAA
CAGTTGAATGCGGTGCTACCAACACTGATAAATGTATCCAATTCTCTTGTAATGAAGCCA
CCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGGTATT
GTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTNTGTT
TAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTNTATGAAAAACGTTGTGATG
NTGATAATGGAANATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTNAAGAAGGTT
ATTGTAAATCTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTCGTTT
CAACTGCTGTCATTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGGTGTTTTCATTT
ATGGTGGTAAAAGAGGTTATNANTATTGNAAAGAATCAAGAAATGTTCAATTCAGTGGTT
CAAATTATAATCCACTTTATGAACAAAATCCAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NGNIFHTPINKCSGCMTCNPVSGNCDLSDXVCQDGNECTTNVCESSDSVLGVCTNST
VECGATNTDKCIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVXCL
TGECIENAGGCIVYEKRCDXDNGXCQQGVCVNNTATXEGYCKSEDYDPLPFICKTGAVVS
TAVIAGVTVAGAVALGVFIYGGKRGYXYXKESRNVQFSGSNYNPLYEQNP


Translated Amino Acid sequence (All Frames)
Frame A:
---NGNIFHTPINKCSGCMTCNPVSGNCDLSDXVCQDGNECTTNVCESSDSVLGVCTNST
VECGATNTDKCIQFSCNEATGCQQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVXCL
TGECIENAGGCIVYEKRCDXDNGXCQQGVCVNNTATXEGYCKSEDYDPLPFICKTGAVVS
TAVIAGVTVAGAVALGVFIYGGKRGYXYXKESRNVQFSGSNYNPLYEQNP


Frame B:
---mvifsthqltnvqvv*lviqflviviyptpfakmvmnvlpmfvnqvivslvyvqtqq
lnavlptlinvsnslvmkppvannqlsfvqmlvvv*lgivivnkvvspnqdlailvfxv*
lvnvlkmlvvvsxmknvvmximexvnkvyv*iipplkkvivnlktmihyhsfvklvlsfq
llsllvslslvllhlvfsfmvvkevxxixknqemfnsvvqiiihfmnkiq


Frame C:
---w*yfphtn*qmfrlydl*ssfw*l*firxrlprw**myyqcl*ik**cpwcmyklns
*mrcyqh**mypill**shrlptiscrlsrcw*lfswvl***trlshqtkilrywcfxfn
w*my*kcwwlyrx*ktl*x**wxmstrcmck*yrhxrrll*i*rl*sitihl*nwccrfn
cchcwchcrwccctwcfhlww*krlxxlxrikkcsiqwfkl*stl*tksk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR249 (CHR249Q) /CSM/CH/CHR2-C/CHR249Q.Seq.d/ 1302 0.0
VHO544 (VHO544Q) /CSM/VH/VHO5-B/VHO544Q.Seq.d/ 1287 0.0
VHI823 (VHI823Q) /CSM/VH/VHI8-A/VHI823Q.Seq.d/ 1287 0.0
VHH544 (VHH544Q) /CSM/VH/VHH5-B/VHH544Q.Seq.d/ 1287 0.0
VHB719 (VHB719Q) /CSM/VH/VHB7-A/VHB719Q.Seq.d/ 1287 0.0
VHB544 (VHB544Q) /CSM/VH/VHB5-B/VHB544Q.Seq.d/ 1287 0.0
VHA180 (VHA180Q) /CSM/VH/VHA1-D/VHA180Q.Seq.d/ 1287 0.0
VFG436 (VFG436Q) /CSM/VF/VFG4-B/VFG436Q.Seq.d/ 1287 0.0
VHJ217 (VHJ217Q) /CSM/VH/VHJ2-A/VHJ217Q.Seq.d/ 1281 0.0
VHA338 (VHA338Q) /CSM/VH/VHA3-B/VHA338Q.Seq.d/ 1281 0.0

own update 2002.10. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 1287 0.0 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 111 2e-20 6
AC132998|AC132998.4 Rattus norvegicus clone CH230-6L10, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 3.8 1
AC106404|AC106404.3 Rattus norvegicus clone CH230-128I3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 3.8 1
AC095148|AC095148.6 Rattus norvegicus clone CH230-8H24, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 3.8 1
AQ650994|AQ650994.1 Sheared DNA-5F23.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-5F23, genomic survey sequence. 44 3.8 1
CZ421071|CZ421071.1 1016774 RP42 Bos taurus genomic clone RP42-49F22, genomic survey sequence. 44 3.8 1
AC137193|AC137193.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 32 6.6 2
AC094544|AC094544.7 Rattus norvegicus clone CH230-4I18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 32 6.6 2
AC129695|AC129695.5 Rattus norvegicus clone CH230-11B16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 32 6.7 2
dna update 2005.11.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 399 e-110
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 184 3e-45
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 167 3e-40
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 159 7e-38
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 146 6e-34
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 109 7e-23
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 100 5e-20
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 86 8e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 80 6e-14
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 79 1e-13
protein update 2009. 5.20
PSORT

psg: 0.83 gvh: 0.49 alm: 0.22 top: 0.80 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.52 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHR249 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR249Z
3' end seq.
>CHR249Z.Seq
NNNNNNNNNNAAATGGTAATATTTTCCACACACCAATTAACAAATGTTCAGGTTGTATGA
CTTGTAATCCAGTTTCTGGTAATTGTGATTTATCCGACNCCGTTTGCCAAGATGGTAATG
AATGTACTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAA
CAGTTGAATGCGGTGCTACCAACACTGATAAATGTATCCAATTCTCTTGTAATGAAGCCA
CCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGGTATT
GTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTNTGTT
TAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTNTATGAAAAACGTTGTGATG
NTGATAATGGAANATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTNAAGAAGGTT
ATTGTAAATCTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTCGTTT
CAACTGCTGTCATTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGGTGTTTTCATTT
ATGGTGGTAAAAGAGGTTATNANTATTGNAAAGAATCAAGAAATGTTCAATTCAGTGGTT
CAAATTATAATCCACTTTATGAACAAAATCCAAA
Length of 3' end seq. 694
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -