>CHR248 (CHR248Q) /CSM/CH/CHR2-B/CHR248Q.Seq.d/
XXXXXXXXXXTAAATGGGAAGAAAGGTAAAGGTTGATCTCGATCAAAAAGTACCATTTGT
ATNTGCAAACGCTCAAGAAGCAAAGGTTAAAAAGTCTGNTAGAGAAATTCAAGTGATTAA
AGAGTTTCGTCAATTATTAAAAGACCATGAAAATGATAAACTCATTAGACATAAAGAGTA
TGGTGGCTACTCAAAGGGGTTTCCAGAGAATCCAAGAATCACAATGAAGGATTATAAACT
TGTTGCTCAGTCTTCATTTGATCAAGGTGGTACAAACCCATTGGNTGATCTAATGCCAGA
CATTAGAACTGTCTTTGAAAAATGTTTTTTNCAAGTACACTCGCCGCTCAACCGTTGGTC
AGAGGTGATGATATCGAATTACTCTTATGGGACGTCCAAGGTTTCCCATGTAGATTCGCT
GTCGAAGGTGGTCAATGTATCGATCCTTCAAGCTTGAAAGTTGGTGGTAAATACTCGTTT
ATTGCCTTTTCAACATGTCGTTGTAAATTTGATAATCAAAAAATTCNCGATTGTGANTGG
ATCATTCAAGGCCCCACAACTCCATCGCTATGCGCAAANNGTGGTAAAATNTGCACTTCA
AAATGTACAACAAACTATTG

---MGRKVKVDLDQKVPFVXANAQEAKVKKSXREIQVIKEFRQLLKDHENDKLIRHKEYG
GYSKGFPENPRITMKDYKLVAQSSFDQGGTNPLXDLMPDIRTVFEKCFXQVHSPLNRWSE
VMISNYSYGTSKVSHVDSLSKVVNVSILQA*klvvntrllpfqhvvvnliikkfxivxgs
fkapqlhryaqxvvkxalqnvqqti

Frame A:
---kweer*rlisikkyhlyxqtlkkqrlkslxekfk*lksfvny*ktmkminsldiksm
vatqrgfqriqesq*riinlllslhlikvvqthwxi*cqtlelslknvfxkytrrstvgq
r**yritlmgrprfpm*ircrrwsmyrsfklesww*ilvyclfnmsl*i**sknsrl*xd
hsrphnsiamrkxw*nxhfkmynkll


Frame B:
---ngkkgkg*srsksticxckrsrskg*kvx*rnssd*rvssiikrp*k**th*t*rvw
wllkgvsresknhnegl*tccsvfi*srwykpig*snarh*ncl*kmffxstlaaqplvr
gddielllwdvqgfpcrfaveggqcidpsslkvggkysfiafstcrckfdnqkixdcxwi
iqgpttpslcaxxgkxctskcttny


Frame C:
---MGRKVKVDLDQKVPFVXANAQEAKVKKSXREIQVIKEFRQLLKDHENDKLIRHKEYG
GYSKGFPENPRITMKDYKLVAQSSFDQGGTNPLXDLMPDIRTVFEKCFXQVHSPLNRWSE
VMISNYSYGTSKVSHVDSLSKVVNVSILQA*klvvntrllpfqhvvvnliikkfxivxgs
fkapqlhryaqxvvkxalqnvqqti

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR248 (CHR248Q) /CSM/CH/CHR2-B/CHR248Q.Seq.d/                       1120   0.0
AHO814 (AHO814Q) /CSM/AH/AHO8-A/AHO814Q.Seq.d/                       1112   0.0
AHH739 (AHH739Q) /CSM/AH/AHH7-B/AHH739Q.Seq.d/                       1106   0.0
CHP646 (CHP646Q) /CSM/CH/CHP6-B/CHP646Q.Seq.d/                       1090   0.0
CHR420 (CHR420Q) /CSM/CH/CHR4-A/CHR420Q.Seq.d/                       1082   0.0
AHF612 (AHF612Q) /CSM/AH/AHF6-A/AHF612Q.Seq.d/                       1078   0.0
CHF421 (CHF421Q) /CSM/CH/CHF4-A/CHF421Q.Seq.d/                       1065   0.0
CHM846 (CHM846Q) /CSM/CH/CHM8-B/CHM846Q.Seq.d/                       1057   0.0
CHE616 (CHE616Q) /CSM/CH/CHE6-A/CHE616Q.Seq.d/                       1049   0.0
AHA785 (AHA785Q) /CSM/AH/AHA7-D/AHA785Q.Seq.d/                       1049   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   605   0.0    2
AC122724|AC122724.32 Medicago truncatula clone mth2-14m14, WORKING DRAFT SEQUENCE.    46   0.86   1
BW519241|BW519241.1 Ciona savignyi cDNA, clone:csga047a13, 5'end, single read.    44   3.4    1
BM168437|BM168437.1 EST570960 PyBS Plasmodium yoelii yoelii cDNA clone PYCPA46 5' end, mRNA sequence.    44   3.4    1
AU216516|AU216516.1 Caenorhabditis elegans cDNA clone:yk838g12 : 3' end, single read.    44   3.4    1
AU216479|AU216479.1 Caenorhabditis elegans cDNA clone:yk838d08 : 3' end, single read.    44   3.4    1
AU214172|AU214172.1 Caenorhabditis elegans cDNA clone:yk810b04 : 3' end, single read.    44   3.4    1
D73336|D73336.1 C.elegans cDNA clone yk117e5 : 3' end, single read.    44   3.4    1
D73092|D73092.1 C.elegans cDNA clone yk113h7 : 3' end, single read.    44   3.4    1
D71455|D71455.1 C.elegans cDNA clone yk75e8 : 3' end, single read.    44   3.4    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 972,572,712

 psg: 0.73  gvh: 0.32  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial

>> prediction for CHR248 is cyt

>CHR248Z.Seq
NNNNNNNNNNTAAATGGGAAGAAAGGTAAAGGTTGATCTCGATCAAAAAGTACCATTTGT
ATNTGCAAACGCTCAAGAAGCAAAGGTTAAAAAGTCTGNTAGAGAAATTCAAGTGATTAA
AGAGTTTCGTCAATTATTAAAAGACCATGAAAATGATAAACTCATTAGACATAAAGAGTA
TGGTGGCTACTCAAAGGGGTTTCCAGAGAATCCAAGAATCACAATGAAGGATTATAAACT
TGTTGCTCAGTCTTCATTTGATCAAGGTGGTACAAACCCATTGGNTGATCTAATGCCAGA
CATTAGAACTGTCTTTGAAAAATGTTTTTTNCAAGTACACTCGCCGCTCAACCGTTGGTC
AGAGGTGATGATATCGAATTACTCTTATGGGACGTCCAAGGTTTCCCATGTAGATTCGCT
GTCGAAGGTGGTCAATGTATCGATCCTTCAAGCTTGAAAGTTGGTGGTAAATACTCGTTT
ATTGCCTTTTCAACATGTCGTTGTAAATTTGATAATCAAAAAATTCNCGATTGTGANTGG
ATCATTCAAGGCCCCACAACTCCATCGCTATGCGCAAANNGTGGTAAAATNTGCACTTCA
AAATGTACAACAAACTATTG