>CHR242 (CHR242Q) /CSM/CH/CHR2-B/CHR242Q.Seq.d/
XXXXXXXXXXAAAATCCAAAAGTTTTTGAAATCCCATTCAATTCAACAAATAAATGGCAA
CTTTCAATTCATAAACTACCAAATGATCAACCACAATCAAATACTTCTACCGCTAGAATA
TTGTATATGAAAGGTGCACCAGAGATTATCTTTGAAAAATGTTCAAAACTTATGATTAAT
GGTAAAGAATTGGAAATTGATGAAAAGATAAAGAATGATTTCATTCAAGCATATGAAGCA
TTGGGTAGTATGGGTGAAAGATGTTTAGGTTTCGCTCAATTATTATTAGATAATGAAAAT
ACCGTACCAAATGATATGTATGATGCTCTAACTTTAAATTTCCCAATGACAGGTTTAACA
TTTGTTGGTTTATGTTCATTATTAGATCCACCAAGAGAAAATGTACCATTTGCAGTTCAT
CAATGTAAAACAGNTGGTATTAAAGTTATTATGGTCACTGGTGATCATCCAATCACTGCT
AAAGCTATCGCTAAAAAAGTTGGTATCATCTCCTCACCAACTGCCGAAGATATAGCATTG
GAAAGAGGTATTCCACTCTCACAAGTCGATGATAATGAAGTTAAAGCT

---NPKVFEIPFNSTNKWQLSIHKLPNDQPQSNTSTARILYMKGAPEIIFEKCSKLMING
KELEIDEKIKNDFIQAYEALGSMGERCLGFAQLLLDNENTVPNDMYDALTLNFPMTGLTF
VGLCSLLDPPRENVPFAVHQCKTXGIKVIMVTGDHPITAKAIAKKVGIISSPTAEDIALE
RGIPLSQVDDNEVKA

Frame A:
---ksksf*npiqfnk*matfns*ttk*sttikyfyr*nivyerctrdyl*kmfktyd*w
*rign**kdke*fhssi*sig*yg*kmfrfrsiiir**kyrtk*yv*csnfkfpndrfni
cwfmfiirstkrkcticsssm*nxwy*syyghw*ssnhc*syr*kswyhlltncrrysig
krystltsr***s*s


Frame B:
---NPKVFEIPFNSTNKWQLSIHKLPNDQPQSNTSTARILYMKGAPEIIFEKCSKLMING
KELEIDEKIKNDFIQAYEALGSMGERCLGFAQLLLDNENTVPNDMYDALTLNFPMTGLTF
VGLCSLLDPPRENVPFAVHQCKTXGIKVIMVTGDHPITAKAIAKKVGIISSPTAEDIALE
RGIPLSQVDDNEVKA


Frame C:
---iqkflkshsiqqingnfqfinyqminhnqillpleyci*kvhqrlslknvqnl*lmv
knwklmkr*rmisfkhmkhwvvwvkdv*vslnyy*imkipyqmicmml*l*isq*qv*hl
lvyvhy*ihqekmyhlqfinvkqxvlkllwslviiqsllklslkklvssphqlpki*hwk
evfhshksmimklk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR242 (CHR242Q) /CSM/CH/CHR2-B/CHR242Q.Seq.d/                       1140   0.0
AHE124 (AHE124Q) /CSM/AH/AHE1-A/AHE124Q.Seq.d/                       1132   0.0
SHK172 (SHK172Q) /CSM/SH/SHK1-C/SHK172Q.Seq.d/                        892   0.0
SHG783 (SHG783Q) /CSM/SH/SHG7-D/SHG783Q.Seq.d/                        888   0.0
SHF148 (SHF148Q) /CSM/SH/SHF1-B/SHF148Q.Seq.d/                        874   0.0
AHC378 (AHC378Q) /CSM/AH/AHC3-D/AHC378Q.Seq.d/                        735   0.0
CHO719 (CHO719Q) /CSM/CH/CHO7-A/CHO719Q.Seq.d/                        174   1e-42
SLH173 (SLH173Q) /CSM/SL/SLH1-D/SLH173Q.Seq.d/                        151   1e-35
VFC718 (VFC718Q) /CSM/VF/VFC7-A/VFC718Q.Seq.d/                         48   2e-04
SLB248 (SLB248Q) /CSM/SL/SLB2-B/SLB248Q.Seq.d/                         48   2e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1132   0.0    1
U70316|U70316.1 Dictyostelium discoideum IonA (iona) gene, partial cds.  1132   0.0    1
AF303222|AF303222.1 Schistosoma mansoni SNaK1 mRNA, complete cds.    84   2e-25  4
AY303373|AY303373.1 Doru lineare sodium/potassium ATPase alpha subunit mRNA, partial cds.    76   1e-13  2
AY303375|AY303375.1 Nematocera sp. FEA-2003 sodium/potassium ATPase alpha subunit mRNA, partial cds.    70   4e-13  2
AY303384|AY303384.1 Octopus rubescens sodium/potassium ATPase alpha subunit mRNA, partial cds.    78   5e-12  3
AY303385|AY303385.1 Lottia austrodigitalis sodium/potassium ATPase alpha subunit mRNA, partial cds.    72   6e-11  3
DT973264|DT973264.1 CLJ145-E05.y1d-s SHGC-CLJ Gasterosteus aculeatus cDNA clone CLJ145-E05 5', mRNA sequence.    78   2e-10  1
DT972840|DT972840.1 CLJ143-A03.y1d-s SHGC-CLJ Gasterosteus aculeatus cDNA clone CLJ143-A03 5', mRNA sequence.    78   2e-10  1
DQ116018|DQ116018.1 Brachionus plicatilis isolate IOM Na+/K+ ATPase alpha subunit mRNA, partial cds.    62   4e-10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70316_1(U70316|pid:none) Dictyostelium discoideum IonA (iona) g...   384   e-105
AC116977_95(AC116977|pid:none) Dictyostelium discoideum chromoso...   384   e-105
EF467997_1(EF467997|pid:none) Loligo pealei Na+/K+ ATPase alpha ...   202   5e-51
EF467998_1(EF467998|pid:none) Loligo opalescens Na+/K+ ATPase al...   202   5e-51
AY303385_1(AY303385|pid:none) Lottia austrodigitalis sodium/pota...   202   5e-51
(Q92036) RecName: Full=Potassium-transporting ATPase alpha chain...   200   3e-50
AF164349_1(AF164349|pid:none) Mus musculus strain CD-1 Na,K-ATPa...   198   8e-50
(Q9WV27) RecName: Full=Sodium/potassium-transporting ATPase subu...   198   8e-50
BC045045_1(BC045045|pid:none) Xenopus laevis hypothetical protei...   198   1e-49
(P24797) RecName: Full=Sodium/potassium-transporting ATPase subu...   197   1e-49

 psg: 0.65  gvh: 0.35  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHR242 is cyt

>CHR242Z.Seq
NNNNNNNNNNAAAATCCAAAAGTTTTTGAAATCCCATTCAATTCAACAAATAAATGGCAA
CTTTCAATTCATAAACTACCAAATGATCAACCACAATCAAATACTTCTACCGCTAGAATA
TTGTATATGAAAGGTGCACCAGAGATTATCTTTGAAAAATGTTCAAAACTTATGATTAAT
GGTAAAGAATTGGAAATTGATGAAAAGATAAAGAATGATTTCATTCAAGCATATGAAGCA
TTGGGTAGTATGGGTGAAAGATGTTTAGGTTTCGCTCAATTATTATTAGATAATGAAAAT
ACCGTACCAAATGATATGTATGATGCTCTAACTTTAAATTTCCCAATGACAGGTTTAACA
TTTGTTGGTTTATGTTCATTATTAGATCCACCAAGAGAAAATGTACCATTTGCAGTTCAT
CAATGTAAAACAGNTGGTATTAAAGTTATTATGGTCACTGGTGATCATCCAATCACTGCT
AAAGCTATCGCTAAAAAAGTTGGTATCATCTCCTCACCAACTGCCGAAGATATAGCATTG
GAAAGAGGTATTCCACTCTCACAAGTCGATGATAATGAAGTTAAAGCT