>CHR225 (CHR225Q) /CSM/CH/CHR2-B/CHR225Q.Seq.d/
XXXXXXXXXXTTAGCTCGTTCATCACCAACCGATAAACAATTGTTGGTTGGTCGTTTAAA
GGATTTAGGTGAGGTTGTCGCTGTTACTGGTGATGGTACAAACGATGGTCCTGCCCTTAA
ATTGGCAAATGTTGGTTTCTCTATGGGTATCTCTGGTACTGAGGTTGCCATTGCCGCTTC
CGATGTCGTACTTTTGGATGATAATTTCGCTTCAATTGTTCGTGCCGTCTTATGGGGTCG
TAATATTTATGACGCAATTTGTAAATTCCTTCAATTCCAATTGACAGTAAATGTAGTAGC
TGTCACTGTTGCATTCATTGGTACATTAACAAGCGATGTAGTTGAAGATAAAGATAATTC
CTCCTCCAGTGGTAGTGCTGATAAAGTTACCGAGGAGGAGCCACGTCAAGGTTCACCATT
AACAGCTGTACAATTACTTTGGGTCAATCTTATTATGGATACTTTAGCCGCTTTAGCACT
TGCAACCGAACCACCAACACCAGAATTATTAGAACGTCCACCAAATGGTAAGAATGCACC
ATTGATCACTCGTTCAATGTGGAAGAATATCATTGGTCAAGCTGCACTTCAATTGGCTAT
TCTTTTCACAATTCTCTATCA

---ARSSPTDKQLLVGRLKDLGEVVAVTGDGTNDGPALKLANVGFSMGISGTEVAIAASD
VVLLDDNFASIVRAVLWGRNIYDAICKFLQFQLTVNVVAVTVAFIGTLTSDVVEDKDNSS
SSGSADKVTEEEPRQGSPLTAVQLLWVNLIMDTLAALALATEPPTPELLERPPNGKNAPL
ITRSMWKNIIGQAALQLAILFTILY

Frame A:
---*lvhhqpinncwlvv*ri*vrlslllvmvqtmvlplnwqmlvslwvslvlrlplplp
msyfwmiislqlfvpsygvvifmtqfvnsfnsn*q*m**lsllhslvh*qam*lkikiip
ppvvvliklprrshvkvhh*qlynyfgsillwil*pl*hlqpnhqhqny*nvhqmvrmhh
*slvqcgrislvklhfnwlffsqfsi


Frame B:
---ssfitnr*tivgwsfkgfr*gcrcyw*wykrwscp*igkcwflygylwy*gchcrfr
crtfg**frfncscrlmgs*yl*rnl*ipsipidskcsschccihwyinkrcs*r*r*fl
lqw*c**syrggatsrftinsctitlgqsyygyfsrfstcnrttntriirtstkw*ecti
dhsfnveeyhwssctsigysfhnsls


Frame C:
---ARSSPTDKQLLVGRLKDLGEVVAVTGDGTNDGPALKLANVGFSMGISGTEVAIAASD
VVLLDDNFASIVRAVLWGRNIYDAICKFLQFQLTVNVVAVTVAFIGTLTSDVVEDKDNSS
SSGSADKVTEEEPRQGSPLTAVQLLWVNLIMDTLAALALATEPPTPELLERPPNGKNAPL
ITRSMWKNIIGQAALQLAILFTILY

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR225 (CHR225Q) /CSM/CH/CHR2-B/CHR225Q.Seq.d/                       1211   0.0
CFG368 (CFG368Q) /CSM/CF/CFG3-C/CFG368Q.Seq.d/                       1203   0.0
VFJ784 (VFJ784Q) /CSM/VF/VFJ7-D/VFJ784Q.Seq.d/                        779   0.0
SLD289 (SLD289Q) /CSM/SL/SLD2-D/SLD289Q.Seq.d/                        272   6e-72
FC-IC1596 (FC-IC1596Q) /CSM/FC-IC/FC-IC1596Q.Seq.d/                   172   4e-42
FC-IC0837 (FC-IC0837Q) /CSM/FC-IC/FC-IC0837Q.Seq.d/                   172   4e-42
CHA674 (CHA674Q) /CSM/CH/CHA6-D/CHA674Q.Seq.d/                         66   7e-10
SLH173 (SLH173Q) /CSM/SL/SLH1-D/SLH173Q.Seq.d/                         44   0.003
VSJ577 (VSJ577Q) /CSM/VS/VSJ5-D/VSJ577Q.Seq.d/                         36   0.61
VFK172 (VFK172Q) /CSM/VF/VFK1-C/VFK172Q.Seq.d/                         36   0.61

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X89369|X89369.1 D.discoideum mRNA for PAT1 protein.              1187   0.0    1
CR382133|CR382133.1 Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii.    90   3e-16  6
AJ420745|AJ420745.1 Blakeslea trispora partial bca1 gene for putative calcium ATPase,  exon 1.    92   2e-14  1
CR380947|CR380947.1 Candida glabrata strain CBS138 chromosome A complete sequence.    90   6e-14  1
DU126004|DU126004.1 KBrH108I02F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH108I02, genomic survey sequence.    46   3e-11  3
CR382130|CR382130.1 Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia  lipolytica.    56   7e-11  2
AZ672155|AZ672155.1 ENTLK90TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   2e-09  3
AZ538639|AZ538639.1 ENTDV48TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   2e-09  3
CR382121|CR382121.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL  Y-1140 of Kluyveromyces lactis.    68   2e-07  1
CF478016|CF478016.1 RTWW3_17_C08.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_17_C08_A022 5', mRNA sequence.    44   3e-07  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57726(S57726) PAT1 protein - slime mold (Dictyostelium discoide...   351   1e-95
DQ009662_1(DQ009662|pid:none) Strongylocentrotus purpuratus sper...   199   4e-50
S95758_1(S95758|pid:none) Homo sapiens clone ht10.1 plasma membr...   199   4e-50
S22393(S22393;S22180;A38871;A44472;I52697)Ca2+-transporting ATPa...   199   4e-50
AB384402_1(AB384402|pid:none) Synthetic construct DNA, clone: pF...   199   4e-50
M97260_1(M97260|pid:none) Human plasma membrane Ca2+-ATPase isof...   199   4e-50
I70165(I70165) adenosine triphosphatase - human  &M95542_1(M9554...   199   7e-50
L14561_1(L14561|pid:none) Homo sapiens plasma membrane calcium A...   199   7e-50
L14561_2(L14561|pid:none) Homo sapiens plasma membrane calcium A...   199   7e-50
(P20020) RecName: Full=Plasma membrane calcium-transporting ATPa...   199   7e-50

 psg: 0.62  gvh: 0.45  alm: 0.30  top: 0.20  tms: 0.20  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vesicles of secretory system

>> prediction for CHR225 is end

>CHR225Z.Seq
NNNNNNNNNNTTAGCTCGTTCATCACCAACCGATAAACAATTGTTGGTTGGTCGTTTAAA
GGATTTAGGTGAGGTTGTCGCTGTTACTGGTGATGGTACAAACGATGGTCCTGCCCTTAA
ATTGGCAAATGTTGGTTTCTCTATGGGTATCTCTGGTACTGAGGTTGCCATTGCCGCTTC
CGATGTCGTACTTTTGGATGATAATTTCGCTTCAATTGTTCGTGCCGTCTTATGGGGTCG
TAATATTTATGACGCAATTTGTAAATTCCTTCAATTCCAATTGACAGTAAATGTAGTAGC
TGTCACTGTTGCATTCATTGGTACATTAACAAGCGATGTAGTTGAAGATAAAGATAATTC
CTCCTCCAGTGGTAGTGCTGATAAAGTTACCGAGGAGGAGCCACGTCAAGGTTCACCATT
AACAGCTGTACAATTACTTTGGGTCAATCTTATTATGGATACTTTAGCCGCTTTAGCACT
TGCAACCGAACCACCAACACCAGAATTATTAGAACGTCCACCAAATGGTAAGAATGCACC
ATTGATCACTCGTTCAATGTGGAAGAATATCATTGGTCAAGCTGCACTTCAATTGGCTAT
TCTTTTCACAATTCTCTATCA