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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR216
Library CH
(Link to library)
Clone ID CHR216
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHR216P
(Link to Original site)
Representative DNA sequence 
>CHR216 (CHR216Q) /CSM/CH/CHR2-A/CHR216Q.Seq.d/
ATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAAGGCCGGAGACAA
AAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAAATCCAAATAATA
GAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTGATGTTGTTAATT
TTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTACCAGAAATCC
CATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATATAACTATCCTT
GTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATTGTAACACCAT
ACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGAGATTTAATTA
TAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGATATACCAAATA
AACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTTTACAACACCC
AAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGAAACCTAGATT
CTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGTAACTGGACCA
TTGATGTAACAATATGTGATGTATTTTATAAAAXXXXXXXXXXTAATCGATGGTAAACCA
TGTACACAACCCTGAAATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAA
CTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGT
TGATGGTCAATACCTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTA
TAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTAT
AATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGA
GAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAA
ACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAA
TAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTG
TTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTC
TAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTA
ATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTAC
TTCTAATATATTTAAAACAAATAAATAAATAGATAAAAAAAAAGCAAATAATTACNCAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
RFLFVKSDCYLINNERPETKITKIRCDDQVISILLNPNNRTDATLEKDTDGKFYFDVVNF
PYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTYNYPCTSVYGRIKPLNIANKIVTPY
NINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGDIPNKPTIDDQGNITIQGSNLYNTQ
IKINSNDPVENLNPTGNLDSTHSTIVFSLPESQYQGNWTIDVTICDVFYK---

---IDGKPCTQP*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsipycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*inr*
kksk*lxn
Translated Amino Acid sequence (All Frames) 
Frame A:
igfyllnrivi**tmkgrrqk*pksdvmiklfpff*iqiielmqhwkrtlmesfilmlli
fhtridfviipmififyqkshpfhlspq*edplishitilvqvfmve*nl*i*qtkl*hh
tisi*tssp*eynqavei*l*iqaqe*fimlhikleiyqinqqsmtkeilpfkevtfttp
klkliqmiplktstqlet*illtpp*yfhylnhsikvtgplm*qyvmyfik---

---*smvnhvhnpeinihtyssltcnvtnydemlkynysntkfnisisvdgqyliaqifq
fkyestisysenkssgfpnemyigivaiiiflaliffaiktqvekyieerrarkafrsvd
nlrlklrekhaaeiakhysfgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfp
nsnpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*id
kkkannyx

Frame B:
*vfic*igllsnkq*kagdknnqnpm**ssyfhsfksk**n*cntgkgh*wkvlf*cc*f
siqg*tl*lyl*ylfftrnpipsicphnrrir*fhi*lslykclw*nktfeyskqncnti
qyqfrpvhhenttrlwrfnykfrlksnl*cfisnwrytk*tnnr*prkyyhsrk*plqhp
n*n*fk*sr*kpqpnwkprfyslhhsifit*itvsr*ldh*cnnm*cil*---

---nrw*tmyttlkstftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsn
lnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqli
iyvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfq
iqiq*ypiln*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*i
kkkqiitq

Frame C:
RFLFVKSDCYLINNERPETKITKIRCDDQVISILLNPNNRTDATLEKDTDGKFYFDVVNF
PYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTYNYPCTSVYGRIKPLNIANKIVTPY
NINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGDIPNKPTIDDQGNITIQGSNLYNTQ
IKINSNDPVENLNPTGNLDSTHSTIVFSLPESQYQGNWTIDVTICDVFYK---

---IDGKPCTQP*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsipycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*inr*
kksk*lxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR216 (CHR216Q) /CSM/CH/CHR2-A/CHR216Q.Seq.d/                       2702   0.0
AHK772 (AHK772Q) /CSM/AH/AHK7-C/AHK772Q.Seq.d/                       1354   0.0
AHO522 (AHO522Q) /CSM/AH/AHO5-A/AHO522Q.Seq.d/                       1352   0.0
SHA327 (SHA327Q) /CSM/SH/SHA3-B/SHA327Q.Seq.d/                       1350   0.0
SHG285 (SHG285Q) /CSM/SH/SHG2-D/SHG285Q.Seq.d/                       1348   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1342   0.0
SHJ822 (SHJ822Q) /CSM/SH/SHJ8-A/SHJ822Q.Seq.d/                       1340   0.0
SHA686 (SHA686Q) /CSM/SH/SHA6-D/SHA686Q.Seq.d/                       1340   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1338   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1338   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   208   1e-86  14
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             34   8e-04  17
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.004  17
AX344550|AX344550.1 Sequence 1 from Patent WO0200932.              34   0.008  14
AX344551|AX344551.1 Sequence 2 from Patent WO0200932.              36   0.015  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   0.042  10
AC171534|AC171534.1 Medicago truncatula chromosome 7 clone mth2-90a20, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    42   0.057  5
AC114688|AC114688.3 Homo sapiens chromosome 18, clone RP11-316J22, complete sequence.    36   0.064  10
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.095  12
AC116049|AC116049.3 Homo sapiens BAC clone RP11-396M11 from 4, complete sequence.    40   0.096  5
dna update 2005.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   481   e-134
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   480   e-134
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   480   e-134
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   480   e-134
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   256   1e-66
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   256   1e-66
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   256   1e-66
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   256   1e-66
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   255   3e-66
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   254   7e-66
protein update 2009. 4.12
PSORT 

 psg: 0.52  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHR216 is nuc
5' end seq. ID CHR216F
5' end seq. 
>CHR216F.Seq
ATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAAGGCCGGAGACAA
AAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAAATCCAAATAATA
GAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTGATGTTGTTAATT
TTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTACCAGAAATCC
CATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATATAACTATCCTT
GTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATTGTAACACCAT
ACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGAGATTTAATTA
TAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGATATACCAAATA
AACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTTTACAACACCC
AAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGAAACCTAGATT
CTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGTAACTGGACCA
TTGATGTAACAATATGTGATGTATTTTATAAAANNNNNNNNNN
Length of 5' end seq. 703
3' end seq. ID CHR216Z
3' end seq. 
>CHR216Z.Seq
NNNNNNNNNNTAATCGATGGTAAACCATGTACACAACCCTGAAATCAACATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACCTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAGA
TAAAAAAAAAGCAAATAATTACNCAAT
Length of 3' end seq. 747
Connected seq. ID CHR216P
Connected seq. 
>CHR216P.Seq
ATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGAAAGGCCGGAGACAA
AAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTTAAATCCAAATAATA
GAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTTTGATGTTGTTAATT
TTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTACCAGAAATCC
CATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATATAACTATCCTT
GTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATTGTAACACCAT
ACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGAGATTTAATTA
TAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGATATACCAAATA
AACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTTTACAACACCC
AAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGAAACCTAGATT
CTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGTAACTGGACCA
TTGATGTAACAATATGTGATGTATTTTATAAAA----------TAATCGATGGTAAACCA
TGTACACAACCCTGAAATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAA
CTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGT
TGATGGTCAATACCTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTA
TAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTAT
AATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGA
GAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAA
ACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAA
TAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTG
TTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTC
TAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTA
ATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTAC
TTCTAATATATTTAAAACAAATAAATAAATAGATAAAAAAAAAGCAAATAATTACNCAAT
Length of connected seq. 1430
Full length Seq ID -
Full length Seq. -
Length of full length seq. -