>CHR213 (CHR213Q) /CSM/CH/CHR2-A/CHR213Q.Seq.d/
ATATAAATATTTTATTTAAAAAAAAACTTTTTTTTTAANAAATGGGTCCAAAAGGTAAAA
AGAAAGGTCAATCATTTGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATA
AAAAAGGACAACAATTAGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAA
AAGGTCAAAGAGGTAAACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAG
CAAAGAAGAGTAATAATAAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAA
GATGAAATTCCTCAACCACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAA
GGTGGTAAACAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAA
GGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGAT
GATGAACAAGAAGAAATTCCTCAACCAGTCAANAAAGGTGGTAAACCAGCTCCACAAAAN
AAAGGTGGTAAACAACAAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAG
AAAGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGAAAACAACAAGAATCTGAAGATGAA
GATGAAGAAGATGAAGXXXXXXXXXXAATTGGTAATGATATTAAATTTGATAATTTAATA
CTTTCAGTTCCCAGGTAGAATTTTATTAAATAATGCATCACTTACACTTGCCTATGGTCA
AAAGTATGGTTTTGTTGGTAGAAATGGTATTGGTAAATCAACATTGGTTAAAAAGATTGC
AATGCGTGATGAAATTACCATTGCACCACATCTTCGTGTATTGTATGTAGAACAAGAGGT
AACTGGTGATGATACAACTCCATTGGATTGTGTATTGGCAGCTGATGAAGAAAGAAAATG
GTTACTTGATGAAGAGAAAGTTTTAACAGAATTGGAAAAAGTTAACCCAAGTTGGCAATT
TGATCCACGTCAAAAGAGAAATTACTCACTTCGTGATATTTATGATCGTCTTAAAGAGAT
TGATGCCGATAAAGCATCGATTAGAGCTGCAAACATTTTAATTGGTTTAGGTTTCACATT
TGAAGAGATATCTGTAAAGAAATCTAGAGATTATTCAGGTGGTTGGAGAATGAGAATTGC
ATTGGCAAGAGCACTCTTTTGTAAACCAGAAGTATTATTACTTGATGAACCTTCAAATCA
TTTAGATTTACATGCTTGTGTTTGGTTAGAGAAATATTTAAATCAATGGGATCGTACATT
ATTGGTTGTATCTCATGAAGCTTCATTCCTTAATGAGGTTGTTGATAATATCATTTACAT
TCATNTATCAAAAGTTGGNATCAATACAGAGGTAACTATGATGCATTTA

i*ifylkknfffxkwvqkvkrkvnhlmiqmkkliikkveikkdnn*kmiflnqlkrveik
kvkevnktlmmnqkiflnq*QRRVIIKKGQRGKQDSDDEQDEIPQPQKKGGKPAPQPQKK
GGKQQDSDDEQDEIPQPVKKGGKPAPQKKGGKQQQQQDSDDEQEEIPQPVXKGGKPAPQX
KGGKQQDSDDEEDEIPQPVKKGGKPAPQKKGGKQQESEDEDEEDE---

---IGNDIKFDNLILSVPR*nfik*citytclwskvwfcw*kwyw*inig*kdcna**ny
hcttsscivcrtrgnw**ynsiglcigs**rkkmvt**resfnrigks*pklai*stske
kllts*yl*ss*rd*cr*sid*sckhfnwfrfhi*rdickei*rlfrwlenencigkstl
l*trsiit**tfksfrftclclvreifksmgsyiigcis*sfip**gc**yhlhsxiksw
xqyrgnydaf

Frame A:
i*ifylkknfffxkwvqkvkrkvnhlmiqmkkliikkveikkdnn*kmiflnqlkrveik
kvkevnktlmmnqkiflnq*QRRVIIKKGQRGKQDSDDEQDEIPQPQKKGGKPAPQPQKK
GGKQQDSDDEQDEIPQPVKKGGKPAPQKKGGKQQQQQDSDDEQEEIPQPVXKGGKPAPQX
KGGKQQDSDDEEDEIPQPVKKGGKPAPQKKGGKQQESEDEDEEDE---

---nw**y*i**fntfssqvefy*imhhlhlpmvksmvllvemvlvnqhwlkrlqcvmkl
plhhifvycm*nkr*lvmiqlhwivywqlmkkengylmkrkf*qnwkkltqvgnlihvkr
eithfvifmivlkrlmpikhrlelqtf*lv*vshlkryl*rnleiiqvvge*elhwqehs
fvnqkyyylmnlqii*iymlvfg*rni*ingivhywlylmklhslmrlliisftfxyqkl
xsiqr*l*ci

Frame B:
ykyfi*kktfflxngskr*kersii**fr*rn***krwk*krttirr*yssts*kgwk*k
rskr*trl***trkysstsskee***kkvkevnkiqmmnkmkflnhkrkvvnqlhnhkrk
vvnnkiqmmnkmkflnqlkkvvnqlhkrkvvnnnnnkiqmmnkkkflnqsxkvvnqlhkx
kvvnnkiqmmkkmkflnqlrkvvnqlhkrkvennknlkmkmkkmk---

---IGNDIKFDNLILSVPR*nfik*citytclwskvwfcw*kwyw*inig*kdcna**ny
hcttsscivcrtrgnw**ynsiglcigs**rkkmvt**resfnrigks*pklai*stske
kllts*yl*ss*rd*cr*sid*sckhfnwfrfhi*rdickei*rlfrwlenencigkstl
l*trsiit**tfksfrftclclvreifksmgsyiigcis*sfip**gc**yhlhsxiksw
xqyrgnydaf

Frame C:
inilfkkklff*xmgpkgkkkgqsfddsdeeinnkkggnkkgqqleddipqpvkkggnkk
gqrgkqdsddepenipqpvakksnnkkrskr*trfr**tr*nssttkerw*tsstttker
w*ttrfr**tr*nssts*krw*tsstkerw*tttttrfr**trrnsstsqxrw*tsstkx
rw*ttrfr**rr*nssts*erw*tsstkerwkttri*r*r*rr*---

---lvmilnlii*yfqfpgrillnnasltlaygqkygfvgrngigkstlvkkiamrdeit
iaphlrvlyveqevtgddttpldcvlaadeerkwlldeekvltelekvnpswqfdprqkr
nyslrdiydrlkeidadkasiraaniliglgftfeeisvkksrdysggwrmrialaralf
ckpevllldepsnhldlhacvwlekylnqwdrtllvvsheasflnevvdniiyihxskvg
intevtmmhl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR213 (CHR213Q) /CSM/CH/CHR2-A/CHR213Q.Seq.d/                       1774   0.0
AHA469 (AHA469Q) /CSM/AH/AHA4-C/AHA469Q.Seq.d/                       1413   0.0
SHG553 (SHG553Q) /CSM/SH/SHG5-C/SHG553Q.Seq.d/                       1398   0.0
VHI889 (VHI889Q) /CSM/VH/VHI8-D/VHI889Q.Seq.d/                       1392   0.0
VHG833 (VHG833Q) /CSM/VH/VHG8-B/VHG833Q.Seq.d/                       1205   0.0
AHM477 (AHM477Q) /CSM/AH/AHM4-D/AHM477Q.Seq.d/                        971   0.0
VFA882 (VFA882Q) /CSM/VF/VFA8-D/VFA882Q.Seq.d/                        852   0.0
SLA717 (SLA717Q) /CSM/SL/SLA7-A/SLA717Q.Seq.d/                        771   0.0
SHC375 (SHC375Q) /CSM/SH/SHC3-D/SHC375Q.Seq.d/                        771   0.0
CFE387 (CFE387Q) /CSM/CF/CFE3-D/CFE387Q.Seq.d/                        771   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF479256|AF479256.1 Dictyostelium discoideum non-transporter ABC protein AbcF4 (abcF4) gene, complete cds; and unknown gene.  1296   0.0    3
DR395513|DR395513.1 USDA-FP_155448 Adult Alate Aphis gossypii (WHAGA) Aphis gossypii cDNA clone WHAGA085_H01 5', mRNA sequence.    58   4e-15  2
AF479253|AF479253.1 Dictyostelium discoideum non-transporter ABC protein AbcF1 (abcF1) gene, complete cds.    50   5e-15  4
AY080833|AY080833.1 Arabidopsis thaliana At5g60790 mRNA sequence.    74   3e-12  2
AY140066|AY140066.1 Arabidopsis thaliana ABC transporter homolog PnATH-like protein (At5g60790) mRNA, complete cds.    74   3e-12  2
BT000946|BT000946.1 Arabidopsis thaliana clone C105151 putative ABC transporter homolog PnATH (At5g60790) mRNA, complete cds.    74   3e-12  2
BT008363|BT008363.1 Arabidopsis thaliana At5g60790 gene, complete cds.    74   3e-12  2
AF479254|AF479254.1 Dictyostelium discoideum non-transporter ABC protein AbcF2 (abcF2) gene, complete cds.    48   1e-11  4
CJ366670|CJ366670.1 Molgula tectiformis cDNA, gastrula/neurula clone:mtga010m22, 5' end.    50   5e-11  2
AB015472|AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.    74   9e-09  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T6B4) RecName: Full=ABC transporter F family member 4;  &AF47...   444   e-123
AF479253_1(AF479253|pid:none) Dictyostelium discoideum non-trans...   216   1e-54
AP004776_11(AP004776|pid:none) Oryza sativa Japonica Group genom...   213   2e-53
DQ146415_1(DQ146415|pid:none) Sarcoptes scabiei type hominis ABC...   208   3e-52
AK092415_1(AK092415|pid:none) Homo sapiens cDNA FLJ35096 fis, cl...   203   1e-50
AK002060_1(AK002060|pid:none) Homo sapiens cDNA FLJ11198 fis, cl...   202   2e-50
AK290106_1(AK290106|pid:none) Homo sapiens cDNA FLJ78266 complet...   202   2e-50
A96669(A96669) protein F1N19.11 [imported] - Arabidopsis thalian...   202   3e-50
BC114751_1(BC114751|pid:none) Bos taurus ATP-binding cassette, s...   201   5e-50
BC046370_1(BC046370|pid:none) Xenopus laevis hypothetical protei...   201   7e-50

 psg: 0.27  gvh: -0.01  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHR213 is nuc

>CHR213F.Seq
ATATAAATATTTTATTTAAAAAAAAACTTTTTTTTTAANAAATGGGTCCAAAAGGTAAAA
AGAAAGGTCAATCATTTGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATA
AAAAAGGACAACAATTAGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAA
AAGGTCAAAGAGGTAAACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAG
CAAAGAAGAGTAATAATAAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAA
GATGAAATTCCTCAACCACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAA
GGTGGTAAACAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAA
GGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGAT
GATGAACAAGAAGAAATTCCTCAACCAGTCAANAAAGGTGGTAAACCAGCTCCACAAAAN
AAAGGTGGTAAACAACAAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAG
AAAGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGAAAACAACAAGAATCTGAAGATGAA
GATGAAGAAGATGAAGNNNNNNNNNN

>CHR213Z.Seq
NNNNNNNNNNAATTGGTAATGATATTAAATTTGATAATTTAATACTTTCAGTTCCCAGGT
AGAATTTTATTAAATAATGCATCACTTACACTTGCCTATGGTCAAAAGTATGGTTTTGTT
GGTAGAAATGGTATTGGTAAATCAACATTGGTTAAAAAGATTGCAATGCGTGATGAAATT
ACCATTGCACCACATCTTCGTGTATTGTATGTAGAACAAGAGGTAACTGGTGATGATACA
ACTCCATTGGATTGTGTATTGGCAGCTGATGAAGAAAGAAAATGGTTACTTGATGAAGAG
AAAGTTTTAACAGAATTGGAAAAAGTTAACCCAAGTTGGCAATTTGATCCACGTCAAAAG
AGAAATTACTCACTTCGTGATATTTATGATCGTCTTAAAGAGATTGATGCCGATAAAGCA
TCGATTAGAGCTGCAAACATTTTAATTGGTTTAGGTTTCACATTTGAAGAGATATCTGTA
AAGAAATCTAGAGATTATTCAGGTGGTTGGAGAATGAGAATTGCATTGGCAAGAGCACTC
TTTTGTAAACCAGAAGTATTATTACTTGATGAACCTTCAAATCATTTAGATTTACATGCT
TGTGTTTGGTTAGAGAAATATTTAAATCAATGGGATCGTACATTATTGGTTGTATCTCAT
GAAGCTTCATTCCTTAATGAGGTTGTTGATAATATCATTTACATTCATNTATCAAAAGTT
GGNATCAATACAGAGGTAACTATGATGCATTTA

>CHR213P.Seq
ATATAAATATTTTATTTAAAAAAAAACTTTTTTTTTAANAAATGGGTCCAAAAGGTAAAA
AGAAAGGTCAATCATTTGATGATTCAGATGAAGAAATTAATAATAAAAAAGGTGGAAATA
AAAAAGGACAACAATTAGAAGATGATATTCCTCAACCAGTTAAAAAGGGTGGAAATAAAA
AAGGTCAAAGAGGTAAACAAGACTCTGATGATGAACCAGAAAATATTCCTCAACCAGTAG
CAAAGAAGAGTAATAATAAAAAAAGGTCAAAGAGGTAAACAAGATTCAGATGATGAACAA
GATGAAATTCCTCAACCACAAAAGAAAGGTGGTAAACCAGCTCCACAACCACAAAAGAAA
GGTGGTAAACAACAAGATTCAGATGATGAACAAGATGAAATTCCTCAACCAGTTAAAAAA
GGTGGTAAACCAGCTCCACAAAAGAAAGGTGGTAAACAACAACAACAACAAGATTCAGAT
GATGAACAAGAAGAAATTCCTCAACCAGTCAANAAAGGTGGTAAACCAGCTCCACAAAAN
AAAGGTGGTAAACAACAAGATTCAGATGATGAAGAAGATGAAATTCCTCAACCAGTTAAG
AAAGGTGGTAAACCAGCTCCACAAAAGAAAGGTGGAAAACAACAAGAATCTGAAGATGAA
GATGAAGAAGATGAAG----------AATTGGTAATGATATTAAATTTGATAATTTAATA
CTTTCAGTTCCCAGGTAGAATTTTATTAAATAATGCATCACTTACACTTGCCTATGGTCA
AAAGTATGGTTTTGTTGGTAGAAATGGTATTGGTAAATCAACATTGGTTAAAAAGATTGC
AATGCGTGATGAAATTACCATTGCACCACATCTTCGTGTATTGTATGTAGAACAAGAGGT
AACTGGTGATGATACAACTCCATTGGATTGTGTATTGGCAGCTGATGAAGAAAGAAAATG
GTTACTTGATGAAGAGAAAGTTTTAACAGAATTGGAAAAAGTTAACCCAAGTTGGCAATT
TGATCCACGTCAAAAGAGAAATTACTCACTTCGTGATATTTATGATCGTCTTAAAGAGAT
TGATGCCGATAAAGCATCGATTAGAGCTGCAAACATTTTAATTGGTTTAGGTTTCACATT
TGAAGAGATATCTGTAAAGAAATCTAGAGATTATTCAGGTGGTTGGAGAATGAGAATTGC
ATTGGCAAGAGCACTCTTTTGTAAACCAGAAGTATTATTACTTGATGAACCTTCAAATCA
TTTAGATTTACATGCTTGTGTTTGGTTAGAGAAATATTTAAATCAATGGGATCGTACATT
ATTGGTTGTATCTCATGAAGCTTCATTCCTTAATGAGGTTGTTGATAATATCATTTACAT
TCATNTATCAAAAGTTGGNATCAATACAGAGGTAACTATGATGCATTTA