CHR212
Library CH
(Link to library)
Clone ID CHR212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10972-1|Contig-U13146-1
Original site URL
Representative seq. ID CHR212P
(Link to Original site)
Representative DNA sequence
>CHR212 (CHR212Q) /CSM/CH/CHR2-A/CHR212Q.Seq.d/
ACACTACAACCCTGCTACAATATCATTCTTGTTTATAAAATTTTATTATTTTTTATTTTA
TTTTATTATTTTTATTTTTATTTTTTTTTTTTAATTCTTCCTATNGTTAAAAAAAAAAAA
AAAAAANANNATTTNTTTTAAAAATTTTNTNAANANAAAAXXXXXXXXXXAAAATCGCTC
CAAGTGTAGAGACCTTTGCCTGTCATGTCTATGGTATTCATGGTATTCAAAAGCTACTTC
AATACCTCTCACCCGATCAAGTCGAATCCATCATTGCCTCCATCAAGGGTAAGGTAATAC
AATTATCAAAGGATAACAAGGGTAACTACTTGATTCAATCATTTTTGAAACAATTTTCAC
CAGAGGTCAATCAATTTGTTTGTGATGCAACCATGGGTAATATTGAGGAGATTTGTACCC
ATAAAGTTGGCTGTACAGTCGTCAATCGTTGTATCGATAATGCCAATCCTGAGCAACTAG
AGAAATTGGTCGATAAAATCACTGAACATTCCCTCAAATTGGTACAAGATCAATTTGGCA
ACTATGTCGTTCAACATCTCCTCTCAAAGAATAAAGCTTACTCTTCAAAATTGATTGTCT
CACTCAAAGATAACATTGCTGAATTATCCATCCAAAAGTTTAGCTCCAATGTCATTGAAA
AGTGTTTACAATTGGCTGATACTCCAACCTATGAATTGATCATCAAGGCT
sequence update 2002.10.25
Translated Amino Acid sequence
hynpatisflfikfyyflfyfiifififff*FFLXLKKKKKXXIXFKNFXXXK---

---KIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYLIQS
FLKQFSPEVNQFVCDATMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSLKL
VQDQFGNYVVQHLLSKNKAYSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLADTPTYELI
IKA


Translated Amino Acid sequence (All Frames)
Frame A:
tlqpcyniilvykillffilfyyfyfyffflilpxvkkkkkkxxxf*kfxxxk---

---KIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYLIQS
FLKQFSPEVNQFVCDATMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSLKL
VQDQFGNYVVQHLLSKNKAYSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLADTPTYELI
IKA

Frame B:
hynpatisflfikfyyflfyfiifififff*FFLXLKKKKKXXIXFKNFXXXK---

---kslqv*rplpvmsmvfmvfksyfntshpiksnpslppsrvr*ynyqritrvtt*fnh
f*nnfhqrsinlfvmqpwvilrrfvpiklavqssivvsimpilsn*rnwsikslnipsnw
ykinlatmsfnissqrikltlqn*lshskitllnypskslapmslksvynwlilqpmn*s
sr

Frame C:
tttllqyhscl*nfiifyfillflflffffnssyx*kkkkkxxfxlkixxxx---

---nrskcrdlclsclwyswyskatsipltrssrihhclhqg*gntiikg*qg*lldsii
fetiftrgqsicl*cnhg*y*gdlyp*swlysrqslyr*cqs*atreigr*nh*tfpqig
trsiwqlcrstsplke*sllfkidcltqr*hc*iihpkv*lqch*kvftig*ysnl*idh
qg

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR212 (CHR212Q) /CSM/CH/CHR2-A/CHR212Q.Seq.d/ 1070 0.0
SHA672 (SHA672Q) /CSM/SH/SHA6-C/SHA672Q.Seq.d/ 1041 0.0
SFA408 (SFA408Q) /CSM/SF/SFA4-A/SFA408Q.Seq.d/ 950 0.0
AFJ353 (AFJ353Q) /CSM/AF/AFJ3-C/AFJ353Q.Seq.d/ 763 0.0
CFB402 (CFB402Q) /CSM/CF/CFB4-A/CFB402Q.Seq.d/ 624 e-178
CHB837 (CHB837Q) /CSM/CH/CHB8-B/CHB837Q.Seq.d/ 103 4e-21
VHK232 (VHK232Q) /CSM/VH/VHK2-B/VHK232Q.Seq.d/ 36 0.70
VHB893 (VHB893Q) /CSM/VH/VHB8-D/VHB893Q.Seq.d/ 36 0.70
CHJ517 (CHJ517Q) /CSM/CH/CHJ5-A/CHJ517Q.Seq.d/ 36 0.70
VSK219 (VSK219Q) /CSM/VS/VSK2-A/VSK219Q.Seq.d/ 34 2.8

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF820078|CF820078.1 EST697460 Coccidioides posadasii saprobic phase cDNA library, 2 tosequence. 46 0.003 2
CT038174|CT038174.1 Sus scrofa genomic clone CH242-6P16, genomic survey sequence. 42 0.033 2
CK863899|CK863899.1 35191 In vitro Root Solanum tuberosum cDNA, mRNA sequence. 44 3.9 1
AW929815|AW929815.1 EST354085 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC5D20 5', mRNA sequence. 44 3.9 1
CZ490245|CZ490245.1 f07507-3prime Exelixis piggyBac WH insertions Drosophila melanogaster genomic Sequence recovered from 3' end of piggyBac, genomic survey sequence. 44 3.9 1
Z83239|Z83239.1 Caenorhabditis elegans Cosmid T09F5. 44 3.9 1
CL320459|CL320459.1 CH242_6P16.f CHORI-242 Sus scrofa genomic clone CH242_6P16, genomic survey sequence. 34 5.4 2
AC123803|AC123803.4 Mus musculus BAC clone RP24-492I15 from chromosome 10, complete sequence. 42 5.5 2
AC091165|AC091165.15 Homo sapiens chromosome 8, clone RP11-366G13, complete sequence. 32 6.9 2
AC017065|AC017065.5 Homo sapiens chromosome 8 clone RP11-366G13, WORKING DRAFT SEQUENCE, 24 unordered pieces. 32 6.9 2
dna update 2005.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017343_431(AE017343|pid:none) Cryptococcus neoformans var. neo... 141 2e-32
(Q92359) RecName: Full=Pumilio domain-containing protein C6G9.14... 140 3e-32
CR954215_201(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 140 3e-32
EF068153_1(EF068153|pid:none) Hortaea werneckii pumilio-family R... 136 5e-31
AP007151_730(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 135 9e-31
AY179886_1(AY179886|pid:none) Schistocerca americana pumilio RBD... 130 5e-29
AJ851393_1(AJ851393|pid:none) Gallus gallus mRNA for hypothetica... 129 1e-28
AK154059_1(AK154059|pid:none) Mus musculus 2 days neonate thymus... 127 3e-28
CU638743_632(CU638743|pid:none) Podospora anserina genomic DNA c... 127 3e-28
(Q14671) RecName: Full=Pumilio homolog 1; Short=Pumilio... 127 3e-28
protein update 2009. 4.12
PSORT

psg: 0.72 gvh: 0.49 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial

>> prediction for CHR212 is nuc

5' end seq. ID CHR212F
5' end seq.
>CHR212F.Seq
ACACTACAACCCTGCTACAATATCATTCTTGTTTATAAAATTTTATTATTTTTTATTTTA
TTTTATTATTTTTATTTTTATTTTTTTTTTTTAATTCTTCCTATNGTTAAAAAAAAAAAA
AAAAAANANNATTTNTTTTAAAAATTTTNTNAANANAAAANNNNNNNNNN
Length of 5' end seq. 170
3' end seq. ID CHR212Z
3' end seq.
>CHR212Z.Seq
NNNNNNNNNNAAAATCGCTCCAAGTGTAGAGACCTTTGCCTGTCATGTCTATGGTATTCA
TGGTATTCAAAAGCTACTTCAATACCTCTCACCCGATCAAGTCGAATCCATCATTGCCTC
CATCAAGGGTAAGGTAATACAATTATCAAAGGATAACAAGGGTAACTACTTGATTCAATC
ATTTTTGAAACAATTTTCACCAGAGGTCAATCAATTTGTTTGTGATGCAACCATGGGTAA
TATTGAGGAGATTTGTACCCATAAAGTTGGCTGTACAGTCGTCAATCGTTGTATCGATAA
TGCCAATCCTGAGCAACTAGAGAAATTGGTCGATAAAATCACTGAACATTCCCTCAAATT
GGTACAAGATCAATTTGGCAACTATGTCGTTCAACATCTCCTCTCAAAGAATAAAGCTTA
CTCTTCAAAATTGATTGTCTCACTCAAAGATAACATTGCTGAATTATCCATCCAAAAGTT
TAGCTCCAATGTCATTGAAAAGTGTTTACAATTGGCTGATACTCCAACCTATGAATTGAT
CATCAAGGCT
Length of 3' end seq. 550
Connected seq. ID CHR212P
Connected seq.
>CHR212P.Seq
ACACTACAACCCTGCTACAATATCATTCTTGTTTATAAAATTTTATTATTTTTTATTTTA
TTTTATTATTTTTATTTTTATTTTTTTTTTTTAATTCTTCCTATNGTTAAAAAAAAAAAA
AAAAAANANNATTTNTTTTAAAAATTTTNTNAANANAAAA----------AAAATCGCTC
CAAGTGTAGAGACCTTTGCCTGTCATGTCTATGGTATTCATGGTATTCAAAAGCTACTTC
AATACCTCTCACCCGATCAAGTCGAATCCATCATTGCCTCCATCAAGGGTAAGGTAATAC
AATTATCAAAGGATAACAAGGGTAACTACTTGATTCAATCATTTTTGAAACAATTTTCAC
CAGAGGTCAATCAATTTGTTTGTGATGCAACCATGGGTAATATTGAGGAGATTTGTACCC
ATAAAGTTGGCTGTACAGTCGTCAATCGTTGTATCGATAATGCCAATCCTGAGCAACTAG
AGAAATTGGTCGATAAAATCACTGAACATTCCCTCAAATTGGTACAAGATCAATTTGGCA
ACTATGTCGTTCAACATCTCCTCTCAAAGAATAAAGCTTACTCTTCAAAATTGATTGTCT
CACTCAAAGATAACATTGCTGAATTATCCATCCAAAAGTTTAGCTCCAATGTCATTGAAA
AGTGTTTACAATTGGCTGATACTCCAACCTATGAATTGATCATCAAGGCT
Length of connected seq. 700
Full length Seq ID -
Full length Seq. -
Length of full length seq. -